Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq68600 96.9 3e-15 seq35257 93.3 4e-14 seq110773 91.5 1e-13 seq67887 91.5 1e-13 seq73737 84.2 2e-11 seq60369 82.4 7e-11 >seq68600 Length=37585 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || ||| | || || || |||||||| ||| || | | Sbjct 35304 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGA---GGTTAACTCC 35248 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| ||||||| || || ||||| | || ||||||| Sbjct 35247 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 35188 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||||| | || ||||| || |||||||| |||||| || || ||| || ||||||| Sbjct 35187 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAATACTT--GCTGATTACA 35130 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 ||||||||||||| || ||||| || | ||||| || | || ||||| || Sbjct 35129 ATATTCAGAAGGACTCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGTTA 35078 >seq35257 Length=66376 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || ||||| |||||||| || ||| || | | Sbjct 801 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 742 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || ||| ||||| || ||| | || ||| || Sbjct 741 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 682 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || ||||||||||| || || || |||| ||| | || | || |||||||| Sbjct 681 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 622 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||| |||||||| || Sbjct 621 TATTCAGAAGGAGTCTACTCTCCA 598 >seq110773 Length=86849 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| ||||| |||||||| || ||||| || || || Sbjct 42711 GACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAG 42652 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | ||||||||||| || |||||||||||||| |||||| |||| | Sbjct 42651 GACGGCCGTACTCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCACTTGGTCCTC 42592 Query 29175 CGATTACGAGGAGGG 29189 || | ||||| ||| Sbjct 42591 CGTCTCCGAGGTGGG 42577 >seq67887 Length=198949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | |||||| | || || || || || ||| |||| ||| | || Sbjct 190725 ATGCAGATCTTCGTTAAAACACTCACTGGGAAGACTATCACCCTCGAAGTCGAAAGCTCA 190666 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || ||| || || || ||| | || ||| || Sbjct 190665 GATACTATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 190606 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || |||||||| | |||| | || ||||| ||| Sbjct 190605 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGGAGAACTTTAGCTGATTATAAT 190546 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || ||||||||||| || |||||| ||||| | || | || || ||| Sbjct 190545 ATCCAGAAGGAATCCACACTTCACTTGGTGCTCCGTCTTCGTGGTGGG 190498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || ||||| |||||| ||| |||| | | Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| || ||| || || ||||| | || |||||| Sbjct 191121 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 191062 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || ||||||| | |||| | ||||||||||| Sbjct 191061 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTACAAC 191002 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||| ||||| || ||||| ||| ||||| Sbjct 191001 ATTCAAAAGGAGTCCACTCTCCACTTGGTG 190972 >seq73737 Length=23676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| || ||| | || ||| || || ||||| || ||||| || |||||| ||||| Sbjct 14051 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 13992 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | ||| | || ||||| |||||||| ||||||||||| |||||| Sbjct 13991 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCTACCCTTCAC 13941 >seq60369 Length=529 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| ||||| || || || || || ||| ||| | | Sbjct 208 AATGCAAATTTTTGTTAAAACCTTGACTGGGAAGACAATCACATTGGAAGTCGAAAGCTC 267 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || ||||| ||||| ||||| |||||| | || |||||| Sbjct 268 GGACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCAGATCA 327 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | |||||||| || ||||| || || ||| ||| | || |||||||| Sbjct 328 ACAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCGGATTACAA 387 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||| ||||| || || || ||| Sbjct 388 TATTCAAAAGGAGTCAACGCTCCAC 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427503104395940