Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq67887 95.1 1e-14 seq73737 93.3 3e-14 seq35257 93.3 3e-14 seq68600 84.2 2e-11 seq110773 82.4 6e-11 >seq67887 Length=198949 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| | || || ||||| |||||| ||| |||| | | Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || ||| || || ||||| | || |||||| Sbjct 191121 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 191062 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || || |||||||| | |||| | ||||||||||| Sbjct 191061 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTACAAC 191002 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||||| || ||||| ||| ||||| Sbjct 191001 ATTCAAAAGGAGTCCACTCTCCACTTGGTG 190972 >seq73737 Length=23676 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 14051 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 13992 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| |||||||||||||||||||| |||||| Sbjct 13991 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCTACCCTTCAC 13941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| || || || ||||| || || ||| || | | Sbjct 14601 AATGCAAATCTTCGTTAAAACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 14542 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| |||||| ||||| |||||| | || || || Sbjct 14541 GGACACTATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 14482 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| | || |||||||| || |||||||||||| ||| |||| ||||| || Sbjct 14481 ACAAAGGTTGATTTTTGCGGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 14422 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| || || |||||| Sbjct 14421 TATTCAAAAGGAGTCAACACTTCAC 14397 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||| || || ||||| || ||||| || ||||||||||||||| | ||| | || || Sbjct 13415 AGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGA 13356 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| |||||||||||||||||||| |||||| Sbjct 13355 TTATAATATTCAAAAGGAATCTACCCTTCAC 13325 >seq35257 Length=66376 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| || ||||| |||||||| || ||| || | | Sbjct 801 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 742 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | || | ||| || ||| ||||| || ||| | || ||| || Sbjct 741 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 682 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || || || ||||| ||| | || | || |||||||| Sbjct 681 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 622 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 |||||| ||||| |||||||| || Sbjct 621 TATTCAGAAGGAGTCTACTCTCCA 598 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 1163 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 1104 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| ||||||||||||||||| || |||||| Sbjct 1103 GATGAAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCAC 1053 >seq68600 Length=37585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/149 (73%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 25118 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 25177 ||||||| || || ||||| | || |||||||||||| | || ||||| || || Sbjct 35224 AAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAA 35165 Query 25178 ACAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTT 25235 |||| | |||||| || || ||| || |||||||||||||| ||||| || ||||| Sbjct 35164 ACAACTTGAAGATGGTCGAATACTT--GCTGATTACAATATTCAGAAGGACTCCACTCTC 35107 Query 25236 CACATGGTGTTACGATTACGAGGAGGGTA 25264 || | ||||| || | || ||||| || Sbjct 35106 CATCTTGTGTTGCGTCTTCGCGGAGGTTA 35078 >seq110773 Length=86849 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||| ||||| |||||||| || ||||| || | || Sbjct 42711 GACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAG 42652 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| | ||||||||||| || || ||||||||||| |||||| |||| | Sbjct 42651 GACGGCCGTACTCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCACTTGGTCCTC 42592 Query 25248 CGATTACGAGGAGGG 25262 || | ||||| ||| Sbjct 42591 CGTCTCCGAGGTGGG 42577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409998009216872