Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq73737 114 2e-20 seq11802 107 3e-18 seq68234 100 4e-16 seq91242 93.3 6e-14 seq107061 91.5 2e-13 seq68600 89.7 8e-13 seq60369 84.2 3e-11 seq35257 84.2 3e-11 >seq73737 Length=23676 Score = 114 bits (126), Expect = 2e-20 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || ||||||||||||| ||||| | | ||| || ||||| || || ||||||| Sbjct 14412 CTTTTGA-ATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCCGCAAAAA 14470 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNN 146207 |||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 14471 TCAACCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACATTAT 14530 Query 146208 NNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGA 146267 ||| || || || || ||||| | |||||||||||| || ||||| ||||||| || Sbjct 14531 CAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAAGGTTTTAACGA 14590 Query 146268 ATATTTGCATT 146278 | ||||||||| Sbjct 14591 AGATTTGCATT 14601 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | |||||||| ||| || |||||||||||| Sbjct 13916 TTCCACCCCTTAGCCTGAGAACAAGGTGAAGGGTAGATTCCTTTTGA-ATATTATAATCT 13974 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || | ||| || |||||||| || |||||||||| ||| ||||| || || Sbjct 13975 GCGAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGT 14034 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || || ||||| || Sbjct 14035 GGGATACCCTCCTTATCCTG 14054 Score = 86.0 bits (94), Expect = 9e-12 Identities = 124/183 (68%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | |||||||| | ||| |||||||| || |||||||||||||| || Sbjct 14191 ATGTTATAATCAGCCAGAGTTCTTCCATCTTCTAATTGCTTCCCAGCAAAAATCAACCTC 14250 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| || || || || || || ||||| || Sbjct 14251 TGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTGTCTATCGTG 14310 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || || || || || || | ||||||||||| || ||||| || |||| || |||||| Sbjct 14311 TCCGAGCTCTCAACCTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAAATTTGC 14370 Query 146276 ATT 146278 ||| Sbjct 14371 ATT 14373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | |||||||| ||| || |||||||||||| Sbjct 13300 TTCCACCCCTTAGCCTGAGAACAAGGTGAAGGGTAGATTCCTTTTGA-ATATTATAATCT 13358 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || | ||| || |||||||| || |||||||||| ||| ||||| || || Sbjct 13359 GCGAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGT 13418 Query 146168 GGAATTCC 146175 || || || Sbjct 13419 GGGATACC 13426 >seq11802 Length=78489 Score = 107 bits (118), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || | |||||||| || ||| ||||| || ||||||||||| ||||| ||| Sbjct 57256 ATATTGTAGTCAGCAAGAGTTCGGCCATCCTCTAACTGCTTTCCAGCAAAGATCAACCTT 57315 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| |||||||| Sbjct 57316 TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 57347 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | |||||||| | || || ||||| || |||||||| | | Sbjct 55843 CCTCCTCTCAATCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCAGCA 55902 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | ||| || |||||||||||||| || ||||| || || || Sbjct 55903 AGAGTCCTCCCATCCTCAAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 55962 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 55963 ATCCCTTCCTTATCTTG 55979 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || || | |||| ||| | ||| ||||| || ||||| || || | | Sbjct 56755 CCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 56814 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| |||||||| || ||||| || |||||||| |||||| Sbjct 56815 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGA 56874 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 56875 ATGCCTTCTTTATCCTG 56891 >seq68234 Length=173017 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || |||| || | || |||||||| ||||| ||||| Sbjct 57351 GTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCA 57410 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| | ||| || || ||||||||||||||||||| || ||||| || ||| Sbjct 57411 GCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGA 57470 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 57471 GGTATCCCTTCTTTGTCCTG 57490 >seq91242 Length=50504 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || || ||||| ||||| ||||| | ||| || || | ||| || Sbjct 24445 ACCAAATGCAACGTGGACTCTTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCA 24504 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||| ||||||| |||||||| || ||||| |||||||||||||| Sbjct 24505 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATCCCTTCTTTATCTTG 24563 >seq107061 Length=185541 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || || | || | ||| |||||||| || || ||||| Sbjct 85773 GTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCA 85832 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || || | | ||| || || ||||| ||||||||||||| ||| |||||||| ||| Sbjct 85833 GCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGA 85892 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 85893 GGTATGCCTTCTTTATCCTG 85912 >seq68600 Length=37585 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | ||| || | ||| | || ||||| || || ||||||| | | Sbjct 32356 CCTCCGCGAAGACGTAACACAAGATGGAGTGTGGATTCCTTCTGAATGCTATAATCAGCA 32415 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| | | ||||||||||||||||||||| ||||| ||||| ||||| Sbjct 32416 AGTGTTCGACCATCCCCGAGTTGTTTTCCAGCAAAAATCAACCTTTGTTGATCTAGAGGA 32475 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 32476 ATTCCTTCCTTGTCTTG 32492 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||| ||| | ||| || | |||||||||||||||||| || ||| Sbjct 35126 ATATTGTAATCAGCAAGTATTCGACCATCTTCAAGTTGTTTTCCAGCAAAAATTAACCTT 35185 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||||||||| || ||||| Sbjct 35186 TGTTGATCTGGAGGAATTCCTTCCTTGTCTTG 35217 >seq60369 Length=529 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | ||| || || ||| || |||||||||||| Sbjct 209 TTCCACCCCTTAGCCTGAGAACTAGGTGGAGAGTTGACTCCTTTTGA-ATATTATAATCT 151 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| | | ||| || ||||| || || ||||| |||| || ||||||||||| Sbjct 150 GCGAGAGTACGCCCATCTTCCAATTGCTTCCCTGCAAATATCAGCCTCTGCTGATCCGGT 91 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || ||||| ||||| Sbjct 90 GGGATACCCTCTTTGTCTTG 71 >seq35257 Length=66376 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || | || | || | || ||||| ||| || |||||||||||| Sbjct 1028 TTCCACCCCTTAGCCTGAGAACAAGGTGAAGGGTGGATTCCTTTTGA-ATATTATAATCT 1086 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || ||| || |||||||| || |||||||||| ||| ||||| || || Sbjct 1087 GCGAGAGTCCTTTCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGT 1146 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || || ||||| || Sbjct 1147 GGGATACCCTCCTTATCCTG 1166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742043548124160