Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq72910 118 7e-22 seq110773 109 4e-19 seq87509 104 2e-17 seq102184 96.9 2e-15 seq73737 91.5 1e-13 seq35257 87.8 1e-12 seq67887 84.2 1e-11 >seq72910 Length=47125 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| ||| ||||| |||||||| || | || ||| | || Sbjct 43086 AGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCC 43145 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || ||||||||||||||||||||||| || | || |||||||| Sbjct 43146 TCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCC 43205 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | | || | |||| |||||||| || | |||||||| Sbjct 43206 TGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 43265 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 43266 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 43298 >seq110773 Length=86849 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||||||||| |||| || | || || ||||| ||||||||||| | Sbjct 41665 TCCTCCCCTCAGCCTCAGTACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 41724 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || ||||||||||| ||||| || || |||| ||||||||| ||| Sbjct 41725 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 41784 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | || | ||| || Sbjct 41785 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAACTTTCAAC 41844 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| ||||| || ||||||||||| Sbjct 41845 CTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 41892 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| |||||||| |||| || |||| | || Sbjct 42137 AGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCGAGGGTACGGCCATCC 42196 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | || ||||||||| || | || |||||| || Sbjct 42197 TCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATC- 42255 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | || | || | ||| | ||||| || | ||||| | Sbjct 42256 -CTGAATTTTGGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCAAGGGTGATTG 42314 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||||| ||||| || |||||||||||| Sbjct 42315 TTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATC 42349 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| |||||||| |||| || |||| | || Sbjct 42365 AGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCGAGGGTACGGCCATCC 42424 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | || ||||||||| || | || |||||| || Sbjct 42425 TCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATC- 42483 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | || | || | ||| | ||||| || | ||||| | Sbjct 42484 -CTGAATTTTGGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCAAGGGTGATTG 42542 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||||| ||||| || |||||||||||| Sbjct 42543 TTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATC 42577 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| ||||| |||||||| |||| || |||| |||| Sbjct 42593 AGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCC 42652 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || |||| ||||| || ||| | | |||||||| Sbjct 42653 TCAAGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGATCTGGGGGAATTCCTTCCTTGTCC 42712 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | | || | |||| ||||| || | || ||||| Sbjct 42713 TGGAT-TTTGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTTATGGT 42771 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || |||||||| |||||||||||| Sbjct 42772 CTTTCCGGTAAGGGTTTTCACGAAGATCTGCATC 42805 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/198 (71%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| || | || |||| | || || | ||||||||| ||||| Sbjct 41929 TTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 41988 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 || | || ||||||||| ||| | || |||||| || || ||||| ||| | | Sbjct 41989 GATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATC--CTGAATTTTGGCCTTGACA 42046 Query 34316 TCGGCTATCGAATCGGTC-GAT---TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 | |||||| ||| || ||||| || | ||||| || ||||||||||| || Sbjct 42047 T----TATCGATGGTGTCAGAACTCTCGACCTCAAGGGTGATAGTCTTGCCGGTGAGGGT 42102 Query 34372 TTTCACAAAGATCTGCAT 34389 ||| || ||||||||||| Sbjct 42103 TTTGACGAAGATCTGCAT 42120 >seq87509 Length=10540 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| |||||||| |||| || ||| |||| Sbjct 1273 AGCACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCC 1214 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| || ||||||||||| ||| | | |||||||| Sbjct 1213 TCGAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCT 1154 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | |||| ||||| || || | ||||| || Sbjct 1153 TGGATCTTG-GCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGTGTGATTGT 1095 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| || || || ||||| || |||||||||||| Sbjct 1094 TTTACCCGTTAGGGTTTTGACGAAGATCTGCATC 1061 >seq102184 Length=23720 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || ||||| ||||| || || | |||| |||||||| || |||||||| | Sbjct 1459 TCCACCACGGAGCCTGAGCACGAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGC 1518 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || || | |||||| || || || || |||| |||||| || || Sbjct 1519 AAGCGTGCGACCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGG 1578 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||||| ||| | || | | || | ||| | || || Sbjct 1579 AATGCCTTCCTTATCCTGTATCTTTGCCTTCACATTGTCAATGGTATCTGAGCTCTCCAC 1638 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| ||||| || || || || | || |||||||||||||||||| ||| Sbjct 1639 TTCCAAGGTGATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATCCCTC 1691 >seq73737 Length=23676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 ||||| || | |||||||||||| || || | |||| || ||||| || |||||||| Sbjct 13071 AATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCC 13130 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| | | || |||||||| || || || || ||||||| ||||||||| Sbjct 13131 GCCAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGC 13190 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | || || || |||||| ||| | || | | |||| || | || Sbjct 13191 GGAATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCA 13250 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||||||||| || || | || || |||||||| ||||| Sbjct 13251 ACTTCCAATGTGATGGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCAT 13300 >seq35257 Length=66376 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 |||||| || | |||||||||||| || || | |||| || ||||| || ||||| || Sbjct 570 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATC 629 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || | | || ||||||||||| || || || || |||| ||||||||| Sbjct 630 TGCAAGTGTCCTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGG 689 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | |||||| || ||||| ||| | || | | |||| || | || Sbjct 690 TGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTC 749 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 750 AACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCAT 800 >seq67887 Length=198949 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || || | || ||||| ||||| || || || Sbjct 190307 TCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTGCTTTCCCGCAAAG 190366 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || |||| |||||| || ||| | | ||||||||| ||||| ||||| | || Sbjct 190367 ATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA-GCTTTCACATT 190425 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||| | ||| || |||| ||||||||||| ||||| | || ||||| Sbjct 190426 GTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGTCAACGTCTTCAC 190485 Query 34378 AAAGATCTGCATC 34390 ||| ||||||||| Sbjct 190486 AAAAATCTGCATC 190498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322443789322880