Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq75959 168 6e-37 >seq75959 Length=145061 Score = 168 bits (186), Expect = 6e-37 Identities = 575/890 (65%), Gaps = 17/890 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 63031 GACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 63090 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | ||| ||| ||||| ||||||| ||||| | | | || | ||||| | Sbjct 63091 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAA 63150 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| | ||| |||||||| ||||| ||||| || || | |||| ||||| | Sbjct 63151 CCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCA 63210 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | | | ||| | || || | ||| | ||||||| | || Sbjct 63211 TTCATTCCCACCAGCGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACA 63270 Query 16169 GCTTC---AATGATTA---TATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGT 16222 || || || ||| || ||| | | || || | | | |||| || Sbjct 63271 GCATCTGCAACAATTCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTTAACAAACTA 63327 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 | || || ||||||||||||||| ||||| ||||||||||| || |||||||| Sbjct 63328 TAAAGCAA---ACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTC 63384 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 || || || | || ||||||| || || ||||| | ||| |||||||| || Sbjct 63385 GAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTT 63444 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 ||||| || || |||||||| || |||||||||||||| ||||| | | ||| Sbjct 63445 CCAGAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTT--- 63501 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | || || ||||| | ||||| || || || | | ||||||| || || Sbjct 63502 TCGGAACCGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTC 63561 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || | ||| ||||| ||||||| | || || |||| |||| || Sbjct 63562 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGC 63621 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCT 16581 | ||| ||||| || ||||| || || || || || || || || || || |||||| | Sbjct 63622 AGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CG 63680 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 || || | | ||| ||||| |||||| | |||| |||||| ||| || || Sbjct 63681 CGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 63740 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701 || || || ||||| ||||| | || | || |||| ||||| | || Sbjct 63741 GTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAG 63800 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 || ||||| | |||| ||||||||||| || || ||||||| ||||| || Sbjct 63801 GGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGC 63860 Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || ||||| ||||||| ||| || | | ||| ||| || |||| Sbjct 63861 TAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 63910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461589589192800