Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq35257 113 3e-20 seq73737 109 4e-19 seq107061 91.5 1e-13 seq60369 82.4 6e-11 >seq35257 Length=66376 Score = 113 bits (124), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| || Sbjct 801 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 860 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||||||||| || || ||| | || || || || |||||| || Sbjct 861 GAGAGTCCTCCCATCTTCCAATTGCTTTCCTGCAAATATCAGCCTCTGCTGATCCGGTGG 920 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC--- 18274 | ||||||||| || ||||| | ||| || | ||| |||| ||| |||| Sbjct 921 GATGCCTTCCTTGTCTTGAATTTTTGCCTTAACATTGTCAATCGTGT--CCGAGCTCTCA 978 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||| ||||| |||| ||||| || || || ||||| ||||||||| Sbjct 979 ACTTCCAAT-GTGATTGTTTTCCCGGTTAAGGTCTTAACAAAGATTTGCATT 1029 >seq73737 Length=23676 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||||||||| || |||||||| || || || || Sbjct 14373 TCCACCACGAAGGCGGAGGACTAGGTGAAGTGTTGACTCCTTTTGAATATTATAATCTGC 14432 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||||||| || |||||| | || | |||||||| ||| || Sbjct 14433 CAGAGTGCGCCCATCTTCCAATTGCTTCCCCGCAAAAATCAACCTTTGTTGGTCCGGTGG 14492 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC--- 18274 | ||||||||||| ||||| ||| || | ||| ||||| ||| |||| Sbjct 14493 AATACCTTCCTTATCTTGAATTTTCGCCTTAACATTATCAATAGTGT--CCGAGCTCTCA 14550 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||| ||||| |||| ||||| || ||||| || || ||||||||| Sbjct 14551 ACTTCCAAT-GTGATTGTTTTCCCGGTTAAGGTTTTAACGAAGATTTGCATT 14601 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | ||| |||||||| || ||||||||||| ||||| || Sbjct 13461 TCCACCACGAAGGCGGAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 13520 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| ||| ||| ||||| ||||| || ||| |||| || || || || ||| || Sbjct 13521 AAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGG 13580 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| || | ||| || | ||| ||||| | ||| Sbjct 13581 AATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAAC 13640 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || || ||||| ||||| ||||||||| Sbjct 13641 TTCCAATGTGATGGTTTTTCCAGTTAAGGTTTTAACAAAGATTTGCATT 13689 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | ||| |||||||| || ||||||||||| ||||| || Sbjct 13689 TCCACCACGAAGGCGGAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 13748 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| ||| ||| ||||| ||||| || ||| |||| || || || || ||| || Sbjct 13749 AAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGG 13808 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| || | ||| || | ||| ||||| | ||| Sbjct 13809 AATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAAC 13868 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || || || || ||||| ||||||||| Sbjct 13869 TTCCAATGTGATGGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCATT 13917 >seq107061 Length=185541 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| ||||||||||| ||||||||||| || || Sbjct 85775 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 85834 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||| ||||| || ||| | || ||||| || ||||| || Sbjct 85835 CAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 85894 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 85895 TATGCCTTCTTTATC 85909 >seq60369 Length=529 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| || ||||| || |||||||| ||||| || || Sbjct 436 TCCACCACGGAGACGAAGAACAAGGTGGAGCGTTGACTCCTTTTGAATATTGTAATCCGC 377 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| || | ||||| || ||| |||| | | ||||||||| || Sbjct 376 GAGAGTCCGTCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 317 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | ||||||||||| |||| ||| || | ||| |||| ||| || ||| Sbjct 316 AATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGT--CCGAGCTTTCG 259 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| | || || ||||| ||||| ||||||||||||||| Sbjct 258 ACTTCCAATGTGATTGTCTTCCCAGTCAAGGTTTTAACAAAAATTTGCATT 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378606368911260