Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq2656 82.4 6e-11 >seq2656 Length=23473 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||||||||| ||||| ||||| ||||| ||| | || || || ||| Sbjct 19815 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGA---GAG 19871 Query 24891 C---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTA--CCGGTT 24945 | || | | || | ||| |||| ||| | | | | | ||| ||| ||| || Sbjct 19872 CTCAGATACCATCGACAATGTAAAGGCAAAGA-TCCAGGACAAGGAGG-GTATTCCTCCA 19929 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGAT 25005 |||||||| | || |||| ||| || |||||||| || ||| | ||| | ||| Sbjct 19930 GACCAGCAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGAT 19989 Query 25006 TACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||| || ||||| || | || |||||||| ||| | || || | ||||| Sbjct 19990 TACAATATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 20042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417490611532160