Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq113574 114 1e-20 seq75959 98.7 9e-16 seq75405 95.1 1e-14 >seq113574 Length=79877 Score = 114 bits (126), Expect = 1e-20 Identities = 170/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 |||||| ||||||||| || ||||||||||| ||||||||||| |||||||| || Sbjct 17466 TTGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTG 17525 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || |||||| | ||| || || | ||| Sbjct 17526 AGACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGA 17585 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA---TTATTCTGTTTAAGTAG 38576 ||| ||||| ||||| |||||||| ||||||| | |||| | | || |||||| || Sbjct 17586 TACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATC--TTTAAG-AG 17642 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || | || | ||||| | ||||| ||| ||| | | ||||| || ||| Sbjct 17643 GTAAGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATAT 17700 >seq75959 Length=145061 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||||||||| || ||||||||||| || || | || || || || ||| Sbjct 63334 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTT 63393 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || || ||||||| ||| ||||||||| || ||||| || Sbjct 63394 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAA 63453 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC 11775 || || || |||||| |||||||| || Sbjct 63454 AAAATACCTTCCACACAAGCAAATGCAAC 63482 >seq75405 Length=32469 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 38395 GACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACC 38452 ||||| ||||||| ||||||||| || ||||| | || ||||| ||||| |||||| Sbjct 7318 GACATACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACC 7377 Query 38453 ATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512 || ||| |||| ||| ||| || | || || || |||||| | ||| || | Sbjct 7378 ATCTTTGAGACATCAAATGATAAGTCTTGATGGCAGATTCGATATCATCCTTGTGGATTC 7437 Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 | | ||| || ||||| | |||||||||||||||||||| Sbjct 7438 CAACAGAAACTCTCATCAACATATGTTGTGGTCTTTCTA 7476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467590397565120