Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq75959 170 3e-37 >seq75959 Length=145061 Score = 170 bits (188), Expect = 3e-37 Identities = 567/875 (65%), Gaps = 14/875 (2%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || || || || | || || || |||||||| || |||| ||| || Sbjct 63045 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 63104 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||| || ||||| | |||| || | || | | | ||||| || | Sbjct 63105 CTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAA 63164 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 63165 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 63224 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 63225 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 63284 Query 36106 AGATATTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 36162 | ||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 63285 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGC 63341 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 ||||| ||||| | ||| ||||| || ||| || ||||| || || || | ||| || Sbjct 63342 AAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGG 63401 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 36281 ||||| || |||||||| | ||| ||||| | | || | | | ||||| || ||||| | Sbjct 63402 CATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATAC 63460 Query 36282 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCC 36338 |||| || ||||| |||| | | ||| || | ||| || ||| |||| Sbjct 63461 CTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCC 63517 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 | | | ||||| | |||||||| | ||||| || || ||||| | || || | Sbjct 63518 AACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 63577 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 | ||||||| | | || || | || | || | | ||||| ||||| || | Sbjct 63578 ATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGG 63637 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 |||| ||||||||||| || ||||| || ||||||||| | ||||| | || || | Sbjct 63638 AATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGA 63697 Query 36519 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 ||||| | || | | | |||| ||||| || || ||||| ||| || |||| Sbjct 63698 CTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAA 63757 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | || | ||||| | || |||| ||||| || ||||| | | ||| | | | Sbjct 63758 AGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGG 63817 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 ||||| ||||| ||| ||||| || | ||||| || || || || ||||| |||| Sbjct 63818 TATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACA 63877 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 | | ||| || | | ||||||||||| || ||| Sbjct 63878 TTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 63912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656860173076320