Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq67887 100 3e-16 seq102184 93.3 4e-14 seq107061 91.5 1e-13 seq73737 91.5 1e-13 seq60369 89.7 5e-13 seq91242 84.2 2e-11 seq35257 84.2 2e-11 seq11802 84.2 2e-11 seq75959 82.4 8e-11 seq2656 82.4 8e-11 >seq67887 Length=198949 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || ||||||| || || || || || ||||| || ||| Sbjct 191182 GCCTCCTCTAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGC 191241 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || |||||||||||| || || || ||||||| | |||||| || || || Sbjct 191242 TAGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCCGGTGG 191301 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | || | ||| | | || | ||||||| | || | Sbjct 191302 GATTCCTTCTTTGTC-CTGAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAA 191360 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| || || || ||||| ||||| || ||||| Sbjct 191361 CCTCAAGGGTTATGGTCTTTCCAGTTAAGGTTTTAACGAAGATCTGCAT 191409 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || ||||| | || ||||| ||||||||||| |||||| Sbjct 190955 CCGCCGCGAAGACGGAGCACCAAGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCG 191014 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | ||| || || ||| |||||| | |||||||| || || Sbjct 191015 AGAGTTCGGCCGTCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGTGGG 191074 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | |||||| | | ||||| Sbjct 191075 ATTCCTTCCTTGTC-CTGAATCTTCGCCTTAACGTTGTCAATTGTGTCAGAGCTTTCCAC 191133 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | ||||| || || |||||||| Sbjct 191134 TTCAAGGGTAATTGTTTTCCCAGTTAGGGTTTTGACAAAGATTTGCAT 191181 >seq102184 Length=23720 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||| | || | || |||||||| |||||||| ||||| Sbjct 1915 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 1974 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| ||| ||| || || || || || ||| ||||||| | ||||| || ||||| Sbjct 1975 CAATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGG 2034 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | |||| ||||| | || | || || | || | Sbjct 2035 AATACCTTCCTTGTCT-TGAATCTTTGCTTTTACATTGTCGATAGTATCTGAACTTTCAA 2093 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| ||| | ||||||||||| | || || || || || |||||| Sbjct 2094 CTTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATA 2143 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || || || | || ||||| || || |||||||| || | || || Sbjct 1697 AAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCAAGAGTCCTG 1756 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || || |||||||||||| |||||| ||| ||||| || || || || || || Sbjct 1757 CCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGGATACCCTCC 1816 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | |||| ||| | | || | || || | ||| ||||| | || Sbjct 1817 TTGTC-TTGAATCTTTGCTTTGACATTGTCAATGGTATCAGAACTCTCAACCTCCAAAGT 1875 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| || || || || || ||||| Sbjct 1876 TATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 1914 >seq107061 Length=185541 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || || ||||| |||||||| ||||| || || | | || Sbjct 85790 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 85849 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 85850 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 85909 >seq73737 Length=23676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || ||||| |||||||| || ||||| | || | | || || Sbjct 14619 AACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTC 14678 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| || ||| |||||| |||||| ||||| || || || ||||||||||| Sbjct 14679 GAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTG 14738 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| ||| | | || | ||||| | ||| || || | || | ||||| Sbjct 14739 GATTTTGGCTTTAACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTT 14798 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| |||| || || || || || ||||| Sbjct 14799 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 14828 >seq60369 Length=529 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | ||| ||||| |||||||| || ||||| Sbjct 435 CCACCACGGAGACGAAGAACAAGGTGGAGCGTTGACTCCTTTTGAATATTGTAATCCGCG 376 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || ||||||||||| || ||| |||||| |||||| ||||| || || Sbjct 375 AGAGTCCGTCCA-TCCTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 317 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || |||||| || | | || | ||||| | | || || Sbjct 316 AATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGTCCGAGCTTTCGAC 257 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| ||||| || || |||||||| Sbjct 256 TTCCAATGTGATTGTCTTCCCAGTCAAGGTTTTAACAAAAATTTGCAT 209 >seq91242 Length=50504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | ||||| || || || ||||| ||||| || ||| Sbjct 25111 CCACCACGTAGACGGAGGACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCA 25170 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| |||||| | |||||||||||||| Sbjct 25171 AGAGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCGGGAGGG 25230 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | ||||||| ||| || Sbjct 25231 ATTCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 25289 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || ||||| | ||| ||||| || |||||||| Sbjct 25290 CTCGAGAGTAATGGTTTTTCCGGTAAGCGTCTTTACAAAGATTTGCAT 25337 >seq35257 Length=66376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||| ||| | || ||||| |||||||||||||| || | || ||| ||||| Sbjct 820 ACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCGAGAGTCCTCCCATCTTCC 879 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || || ||| | ||||| | |||||||| || || |||||||| ||||| || Sbjct 880 AATTGCTTTCCTGCAAATATCAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTGTC-TTG 938 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||||| ||| | | || | ||||| | | ||| || || | || | || || Sbjct 939 AATTTTTGCCTTAACATTGTCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTT 998 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || || || || |||||||| Sbjct 999 CCCGGTTAAGGTCTTAACAAAGATTTGCAT 1028 >seq11802 Length=78489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || || || || ||||| |||||| | |||||||| ||||| ||||||||||| Sbjct 56827 TCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTA 56886 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | || | ||| |||| ||| ||||||| || | Sbjct 56887 TCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAACCTCAAGTGTAATA 56946 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| |||||||| || || |||||| Sbjct 56947 GTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCATA 56982 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | ||||| || || ||||| |||||||||||||| Sbjct 55614 GCCACCACGGAGACGAAGAACCAGGTGAAGAGTTGATTCTTTCTGAATGTTATAATCAGC 55673 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || || ||||| ||||||||| | ||||| | ||||| || || || Sbjct 55674 AAGGGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGG 55733 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | |||| || | | || | || || | | ||| | Sbjct 55734 AATACCCTCCTTGTC-CTGAATCTTTGCCTTCACATTGTCAATGGTATCCGAGCTCTCAA 55792 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||||| || ||||| || || || || || ||||| Sbjct 55793 CCTCCAGGGTGATCGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 55841 >seq75959 Length=145061 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 || ||||| || ||| |||| || |||||| ||||||||| | ||||| || || || Sbjct 63500 ACATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGC 63441 Query 52669 TTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAAC 52728 || || ||||| | | |||| ||| ||||||| || | || || ||| Sbjct 63440 TTCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAAC 63381 Query 52729 GAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATA 52783 |||||||| || | |||||||| ||||| |||||||| |||||| ||||| Sbjct 63380 GAGTTGATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTTTATA 63326 >seq2656 Length=23473 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || | |||| || ||||| || || ||||||||||| | ||| || Sbjct 20261 AAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCAAGTGTCCTT 20202 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| || || || || ||| | |||| || ||||| || || || || ||||| Sbjct 20201 CCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCTGGGGGAATCCCTTCC 20142 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 || || ||| |||| | || | | || | |||||| | ||| ||||| | ||| Sbjct 20141 TTATC-TTGAATTTTGGCCTTCACGTTATCAATTGTGTCCGAACTCTCAACCTCCAAGGT 20083 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || ||||| || || ||||| |||||||| Sbjct 20082 GATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 20044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495074674761600