Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq75959 178 2e-39 >seq75959 Length=145061 Score = 178 bits (196), Expect = 2e-39 Identities = 566/872 (65%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || || || || | || || || |||||||| || |||| || || Sbjct 63045 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 63104 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||||||||| | |||| || | || | | | ||||| || | Sbjct 63105 CTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAA 63164 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 63165 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 63224 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 63225 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 63284 Query 49908 AGATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGC 49964 |||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 63285 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGC 63341 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 ||||| ||||||| ||| ||||| || ||| | ||||| || || || | ||| || Sbjct 63342 AAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGG 63401 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTC 50083 ||||| || |||||||| | ||| ||||| | | || | | ||||| || || || | Sbjct 63402 CATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATAC 63460 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACT 50143 |||| || ||||| ||||| | | ||| || | | || | | ||||| Sbjct 63461 CTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCGATCCAAC 63520 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 63521 GTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATC 63580 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | ||||||| | | || || | |||| || | | ||||| ||||| || |||| Sbjct 63581 TGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGGAAT 63640 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | ||||||||||| || || || || ||||||||| | ||||| | || || |||| Sbjct 63641 GGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGACTT 63700 Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 || | || | | | |||| ||||| || || ||||| ||| || ||||| | Sbjct 63701 CTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGG 63760 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATAT 50443 | | ||||| | || ||||| ||||| ||| ||||| | | ||| | | | ||| Sbjct 63761 CAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGGTAT 63820 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 || ||||| ||| ||||| || | ||||| || || || || ||||| ||||| | Sbjct 63821 CTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTT 63880 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||| || | | ||||| |||||||| ||| Sbjct 63881 CCCAAATTTGTGGGTATTGAATTGGGAACATA 63912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716836320618720