Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq102184 89.7 4e-13 seq72910 84.2 2e-11 seq73737 82.4 6e-11 >seq102184 Length=23720 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||||| ||| |||||| || | |||||||| | Sbjct 2144 CCGCCACGAAGGCGAAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 2203 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | ||| ||||| ||||||||||| | |||||||| | || Sbjct 2204 AGAGTTCTACCATCTTCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGA 2263 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | ||||| || ||| ||||| ||| |||||| Sbjct 2264 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTC-TGAGCTCTCGAC 2322 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| ||||| ||||| || || ||||| ||||| |||||||| Sbjct 2323 CTCAAGCGTAATAGTCTTTCCAGTCAGGGTTTTGACAAAGATTTGCAT 2370 >seq72910 Length=47125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| |||| ||||| || | |||||||| | Sbjct 43071 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 43130 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||||| ||||| ||||| | ||||| || || | || Sbjct 43131 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 43190 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | ||||||| | ||||| Sbjct 43191 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACC 43250 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || || ||||| |||||||| || || ||||| ||| Sbjct 43251 TCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 43301 >seq73737 Length=23676 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||| ||||| | || || || | || |||||||| || || ||||| Sbjct 14409 CTCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCCGCAAA 14468 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||| | ||||| || | || | |||||| || || || | | || || | Sbjct 14469 AATCAACCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACATT 14528 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 ||| ||||| | ||| ||| || || | || || ||||| ||||||| ||||| | Sbjct 14529 ATCAATAGTGTC-CGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAAGGTTTTAA 14587 Query 43097 CAAAAATTTGCATT 43110 | || ||||||||| Sbjct 14588 CGAAGATTTGCATT 14601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380628030149784