Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq75959 185 1e-41 >seq75959 Length=145061 Score = 185 bits (204), Expect = 1e-41 Identities = 570/875 (65%), Gaps = 14/875 (2%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || || || || | || || || ||||||||||| |||| || || Sbjct 63045 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 63104 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||||||||| | |||| || | || | | | ||||| || | Sbjct 63105 CTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAA 63164 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||||||||| || | |||||| || ||| | |||||| || | ||||||||| | || Sbjct 63165 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 63224 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 63225 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 63284 Query 42013 AGATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 42069 | ||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 63285 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGC 63341 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 ||||| ||||||| ||| || || || ||| || ||||| || || || | ||| || Sbjct 63342 AAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGG 63401 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTC 42188 ||||| || |||||||| | ||| ||||||| | || | | | ||||| || || || | Sbjct 63402 CATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATAC 63460 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCC 42245 |||| || ||||| |||| | | ||| || | ||| || ||| |||| Sbjct 63461 CTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCC 63517 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 63518 AACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 63577 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 | ||||||| | | || || | || | || | | ||||| ||||| || | Sbjct 63578 ATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGG 63637 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 |||| ||||||||||| || || || || ||||||||| | ||||| | ||| || | Sbjct 63638 AATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGA 63697 Query 42426 CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 ||||| | || | | | |||| ||||| || || ||||| ||| || |||| Sbjct 63698 CTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAA 63757 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA 42545 | || | ||||| | || |||| ||||| | || |||| | | ||| | | | Sbjct 63758 AGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGG 63817 Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 ||||| ||||| ||| ||||| || | ||||| || || ||| || ||||| |||| Sbjct 63818 TATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACA 63877 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | | ||| || | | |||||||||||||| ||| Sbjct 63878 TTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 63912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669800713536480