Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq67887 93.3 3e-14 seq102184 91.5 1e-13 seq2656 91.5 1e-13 >seq67887 Length=198949 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||||||||| |||||||| || | ||| | |||| || Sbjct 190972 CACCAAGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTTCGGCCGTCTTC 191031 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| || || ||| | || | ||||||||||| || | || || ||||| Sbjct 191032 CAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 191091 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 ||| ||| || || | | | | || | ||| || ||| ||| | |||||| || Sbjct 191092 AATCTTCGCCTTAACGTTGTCAATTGT---GTCAGAGCTTTCCACTTCAAGGGTAATTGT 191148 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || |||| ||||||||||| |||||||| Sbjct 191149 TTTCCCAGTTAGGGTTTTGACAAAGATTTGCAT 191181 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| ||||| |||||||| || | ||| | || |||| || Sbjct 190294 GTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTG 190353 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || |||||| | || || |||||||||||| ||| | ||||| ||||| ||| || Sbjct 190354 CTTTCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTT 190413 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | | |||||| | ||| || | || |||||||| || || Sbjct 190414 AGCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGT 190473 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 190474 CAACGTCTTCACAAAAATCTGCAT 190497 >seq102184 Length=23720 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || ||||| || ||||| |||||||| |||| ||| | ||||||| || || Sbjct 1940 TGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGC 1999 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || ||||||||||| ||| || | || || ||||| ||| || Sbjct 2000 TTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCTTGAATCTTT 2059 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 |||||| | | ||| |||||| | || ||| | ||| ||||| || || || Sbjct 2060 GCTTTTACATTGTCGATAGTATCTGAACTTTCAACTTCAAGGGTGATGGTCTTGCCGGTA 2119 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | || |||||||| || ||||| Sbjct 2120 AGTGTCTTGACAAAGATCTGCAT 2142 >seq2656 Length=23473 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||| ||||||||||| || | || | ||||| Sbjct 20481 CACAAGGTGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTC 20422 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | || || ||||||||||| || | || ||||| || Sbjct 20421 CAGCTGCTTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTG 20362 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||| || |||| ||| | || ||||| || Sbjct 20361 AATTTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTT 20302 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| |||||||||||||| || ||||| Sbjct 20301 TCCTGTCAAAGTTTTGACAAATATCTGCAT 20272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413766666817912