Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq73737 116 3e-21 seq2656 102 6e-17 seq35257 98.7 7e-16 seq11802 98.7 7e-16 seq60369 84.2 2e-11 >seq73737 Length=23676 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAA 43988 ||| ||||||||||||||||| | | || ||| |||| |||||||| || || |||| Sbjct 14409 CTCCTTTTGAATATTATAATCTGCCAGAGTG-CGCCCATCTTCCAATTGCTTCCCCGCAA 14467 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | ||||||| ||| |||||| | || | |||||| |||||| |||||| || || Sbjct 14468 AAATCAACCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACAT 14527 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || ||| ||| || | ||| || || | || |||||||| |||||||| || || | Sbjct 14528 TATCAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAAGGTTTTAA 14587 Query 44109 CAAATATTTGCAT 44121 | || |||||||| Sbjct 14588 CGAAGATTTGCAT 14600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAA 43989 || ||||||||||||||||| | | | | || ||| ||||||||||| |||||||| Sbjct 13954 TCCTTTTGAATATTATAATC-TGCGAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAA 14012 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| | |||||||| | || | ||| || ||||| || || || || | Sbjct 14013 AATCAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGTATCTTGGCCTTCACATT 14072 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| ||||| | |||||| || | ||| || || || || || ||||||||||| Sbjct 14073 ATCAATGGTATCGGAACTCTCCACCTCCAACGTGATCGTCTTCCCCGTCAAAGTCTTCAC 14132 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 14133 AAAGATCTGCATG 14145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCGTCCAATTGTTTTCCTGCA 43987 ||| |||||||| ||||| || || || | || |||| ||||| |||||||| ||| Sbjct 13725 CTCCTTTTGAATGTTATAGTCAGC-AAGTGTC-CTACCATCCTCCAACTGTTTTCCAGCA 13782 Query 43988 AATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACC 44047 || || | || ||||||||| | || | |||||||||||| || || || || Sbjct 13783 AAGATGAGCCTCTGCTGGTCCGGCGGAATACCTTCTTTATCCTGTATCTTCGCCTTCACA 13842 Query 44048 ATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTC 44107 | ||| || |||| ||| || || | || || ||||| || ||||| ||||| Sbjct 13843 TTGTCAATCGTGTCTGAGCTCTCAACTTCCAATGTGATGGTTTTTCCAGTTAAGGTCTTA 13902 Query 44108 ACAAATATTTGCAT 44121 ||||| |||||||| Sbjct 13903 ACAAAGATTTGCAT 13916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| ||||||||||| ||||| | |||| |||| || | |||||||||||||| Sbjct 14637 CTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTGCAAA 14696 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCA 44048 ||||| ||||| || || | || | ||||||||| | ||| | |||| | || | || Sbjct 14697 GATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGA--TTTTGGCTTTAACA 14754 Query 44049 TAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTC 44107 | | | | || |||| ||| || |||| || || || || || || | |||||| Sbjct 14755 TTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGTCTTC 14814 Query 44108 ACAAATATTTGCAT 44121 ||||| || ||||| Sbjct 14815 ACAAAGATCTGCAT 14828 >seq2656 Length=23473 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | ||||||| ||| || || ||| || || || |||||||| Sbjct 20271 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGC 20212 Query 43954 TAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || | || ||| || | ||| || |||||||||||||| || |||||||| | | Sbjct 20211 -AAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCTGGGG 20153 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| |||||| || || || ||| || || | ||| | Sbjct 20152 GAATCCCTTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTGTCCGAACTCTCAA 20093 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || | || || ||||| || || |||||||| || || ||||||||| Sbjct 20092 CCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCATG 20043 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||| | | ||||||||| || || || || |||||||| ||||| | Sbjct 20042 CCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC-TGC 19984 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || ||| || | |||||| || ||||||||||||| |||||||| |||| Sbjct 19983 AAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 19924 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || || || ||| || || | | | ||||||| ||| || Sbjct 19923 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATGGTATCTGAGCTCTCAAC 19864 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || |||||||| || ||||| || |||||| Sbjct 19863 TTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 19815 >seq35257 Length=66376 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| |||||||||||||||| || ||||| ||| | || | ||||| | Sbjct 872 CATCTTCCAATTGCTTTCCTGCAAATATCAGCCTCTGCTGATCCGGTGGGATGCCTTCCT 931 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| ||||||| || || | ||| || || | ||| || || | || | Sbjct 932 TGTCTTGAATTTTTGCCTTAACATTGTCAATCGTGTCCGAGCTCTCAACTTCCAATGTGA 991 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| |||||||| ||||| ||||| |||||||| Sbjct 992 TTGTTTTCCCGGTTAAGGTCTTAACAAAGATTTGCAT 1028 >seq11802 Length=78489 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||||| | ||||||||| || ||| |||||| || || |||||||| Sbjct 55843 CCTCCTCTCAATCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCAGCA 55902 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | ||| || || ||||| ||||||| |||||||| | || Sbjct 55903 AGAGTCCTCCCATCCTCAAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 55962 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| |||||| |||||| ||||| | | | || || | ||| || Sbjct 55963 ATCCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCGATGGTGTCGGAACTCTCAACC 56022 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || || ||||||||||| || ||||| Sbjct 56023 TCAAGGGTGATAGTTTTCCCTGTCAATGTCTTCACAAAGATCTGCAT 56069 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || |||| | | ||||||||| || || || || || || |||||||| Sbjct 56298 ACCACCCCTCAGGCGCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTATAATCAGC 56357 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| || | ||||| || ||||| ||||||| |||||||| | || Sbjct 56358 TAAAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAAATCAACCTCTGCTGGTCAGGTGG 56417 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| |||||| ||||| | | | || || | ||| || Sbjct 56418 GATCCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCGATGGTGTCCGAGCTCTCAAC 56477 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 56478 CTCAAGGGTAATGGTTTTCCCTGTTAATGTCTTCACAAAGATTTGCAT 56525 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || |||| || | ||||| ||| || ||| || || |||||||| || || Sbjct 56754 ACCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 56813 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | ||| ||||| || || ||||||| ||||| || |||| Sbjct 56814 AAGGGTACGACCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGG 56873 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||| |||||| | ||| ||||| | ||| || Sbjct 56874 AATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCGGAACTCTCAAC 56933 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || ||||| || ||||| || ||||| Sbjct 56934 CTCAAGTGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 56981 >seq60369 Length=529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| ||||||||||||||||| | |||| |||| |||||||| || |||||||| Sbjct 172 CTCCTTTTGAATATTATAATCTGCGAGAGTACGCCCATCTTCCAATTGCTTCCCTGCAAA 113 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| || ||||| ||| | || | ||| ||||| ||| ||||| || || | Sbjct 112 TATCAGCCTCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGTATTTTCGCCTTAACATT 53 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAA 44100 ||| || || | ||| || || | || |||||||| |||||||| Sbjct 52 GTCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354087738061104