Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq67887 105 6e-18 seq68234 102 7e-17 seq35257 87.8 2e-12 >seq67887 Length=198949 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || || || ||||||||||| | | ||| |||||||||||| Sbjct 190295 TGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTGC 190354 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || |||||| | || |||||||| ||||| ||| | || || ||||| ||| || Sbjct 190355 TTTCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA 190414 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | | ||| || ||| | |||| |||| || |||||||| |||||| Sbjct 190415 GCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGTC 190474 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| || |||||||| ||||| Sbjct 190475 AACGTCTTCACAAAAATCTGCAT 190497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || || || ||||| |||||||||||| | | |||| ||||| Sbjct 190972 CACCAAGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTTCGGCCGTCTTC 191031 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||| || || || ||| | || | |||||| ||||| || | ||||| ||||| Sbjct 191032 CAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 191091 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || || || | | ||| | || |||| ||| | |||||| ||||| Sbjct 191092 AATCTTCGCCTTAACGTTGTCAATTGTGTCAGAGCTTTCCACTTCAAGGGTAATTGTTTT 191151 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||||||||| |||||||| Sbjct 191152 CCCAGTTAGGGTTTTGACAAAGATTTGCAT 191181 >seq68234 Length=173017 Score = 102 bits (112), Expect = 7e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||||| | |||||| |||| || ||||| |||||||| || || Sbjct 57342 TTAATCATAGTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATA 57401 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| |||| |||||||| Sbjct 57402 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGC 57461 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 57462 TGGTCAGGAGGTATCCCTTCTTTGTC 57487 >seq35257 Length=66376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| || || ||||| ||||| || || | | ||| | |||||||||||| Sbjct 826 TGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCGAGAGTCCTCCCATCTTCCAATTGC 885 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | || |||||||| ||||| || | |||||| ||||| ||||||| Sbjct 886 TTTCCTGCAAATATCAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGAATTTTT 945 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || | | ||| | || | || | || ||||| || || ||||| ||||| Sbjct 946 GCCTTAACATTGTCAATCGTGTC-CGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGT 1004 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| ||||||||| Sbjct 1005 TAAGGTCTTAACAAAGATTTGCATT 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418771316360988