Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq75959 125 6e-24 >seq75959 Length=145061 Score = 125 bits (138), Expect = 6e-24 Identities = 475/740 (64%), Gaps = 9/740 (1%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||| ||||| || | |||||| || ||||| || || || || ||| Sbjct 63031 GACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 63090 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | ||| ||| ||||| |||| || ||||| | | | || | || | | | Sbjct 63091 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAA 63150 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || || | |||||||| ||||| || || || ||||| | |||| ||||| | Sbjct 63151 CCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCA 63210 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 |||||||| | | ||||| || || | ||| | ||||||| || || Sbjct 63211 TTCATTCCCACCAGCGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACA 63270 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA---TAGATGCTTA 13141 || || ||| || || |||| ||||| || | | | | || | || || Sbjct 63271 GCATCTGCAACAAT-TCCCTTAACTCGTTC-CTCA-GTAAGCTTCGTCCTTAACAAACTA 63327 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 | | || ||| ||||||||||||||||| ||||| || || || | |||||| || Sbjct 63328 TAAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAG 63387 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || |||| || ||||| | ||| || ||||| | ||| ||||||||| || || Sbjct 63388 AAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCA 63447 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || ||||| || ||||| || ||||| || | ||| | || || | | | | Sbjct 63448 GAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATG---TTTCG 63504 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 || || ||||| | ||||| || || || | | ||| ||| ||| | || Sbjct 63505 GAACCGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCA 63564 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 | |||| ||||| ||||||| | | ||| || |||| |||| | | Sbjct 63565 ACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGA 63624 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 || ||||| || ||||| || ||||| ||||| |||||||| || || ||| | ||| Sbjct 63625 CTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCC 63684 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | || || ||||| || ||| | |||| |||||| ||| || ||||| Sbjct 63685 TCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCT 63744 Query 13562 CTAGCAGCaaaaaaaGCAAG 13581 || || ||||| ||||| Sbjct 63745 GAGGCGGCGAAAAAGGCAAG 63764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430144358494296