Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq87509 96.9 3e-15 seq72910 95.1 1e-14 seq62100 95.1 1e-14 seq110773 91.5 1e-13 seq102184 87.8 2e-12 seq91242 87.8 2e-12 >seq87509 Length=10540 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || ||||||||||| || | ||| ||||||| Sbjct 1271 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTC 1212 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | ||||||||| || || | | ||||||||| Sbjct 1211 GAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTG 1152 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| ||| || ||| | ||| || || Sbjct 1151 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGTGTGATTGT 1095 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGATCGAAGAAAGA 48747 |||||| || || ||||| || || ||||||||| | ||| | || |||||| Sbjct 1094 TTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTTCGCTT--TGGAGGAAAGA 1043 >seq72910 Length=47125 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| ||||| || |||||||||||||| | ||| | ||||| Sbjct 43088 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 43147 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || ||| || |||| | |||||||| ||| || | | |||||||||| Sbjct 43148 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 43207 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || || |||| || || ||| | || ||||| Sbjct 43208 GATCTTTGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 43265 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || |||||||| || ||||||||| Sbjct 43266 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 43298 >seq62100 Length=87079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| ||||| | | ||| | ||||| ||||| Sbjct 33754 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTG 33813 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || |||| || |||||||| ||| || | | |||||||||| ||| || Sbjct 33814 CTTACCTGCGAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTT 33873 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| || | ||||| ||| | || || || || || || Sbjct 33874 AGCCTTAACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCCGT 33933 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| || ||||||||| Sbjct 33934 CAGGGTCTTCACGAATATCTGCATC 33958 >seq110773 Length=86849 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| |||||||||||||| || | || | ||||| Sbjct 42140 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCGAGGGTACGGCCATCCTCG 42199 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || || | |||||| || || | | ||||| ||| | Sbjct 42200 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGA 42259 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | |||||||| | | ||| ||| | || || ||||| Sbjct 42260 ATTTTGGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCAAGGGTGATTGTTTTG 42319 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| ||||| || || ||||||||| Sbjct 42320 CCGGTGAGGGTTTTGACGAAGATCTGCATC 42349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| |||||||||||||| || | || | ||||| Sbjct 42368 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCGAGGGTACGGCCATCCTCG 42427 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || || | |||||| || || | | ||||| ||| | Sbjct 42428 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGA 42487 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | |||||||| | | ||| ||| | || || ||||| Sbjct 42488 ATTTTGGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCAAGGGTGATTGTTTTG 42547 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| ||||| || || ||||||||| Sbjct 42548 CCGGTGAGGGTTTTGACGAAGATCTGCATC 42577 >seq102184 Length=23720 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | || || ||||| || || |||||| || ||||| || || || Sbjct 1688 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGC- 1746 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||||||||| || ||||| | | || ||||||||||| || || Sbjct 1747 AAGAGTC-CTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCG 1805 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676 | | || |||||||| ||| || ||| |||| | | |||||||| | | ||| Sbjct 1806 GGATACCCTCCTTGTCTTGAATCTT-TGCTTTGACATTGTCAATGGTATCAGAACTCTCA 1864 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || | ||| || |||||||||||||| Sbjct 1865 ACCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 1914 >seq91242 Length=50504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||||||||| ||||| || || | |||| | ||||| |||||| Sbjct 24679 TGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGCAAGAGTTCGCCCATCCTCAAGCTGC 24738 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || || | ||||||||| || | | |||||||||| || ||| Sbjct 24739 TTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGTATCTTC 24798 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| ||| | ||||| || | ||| ||| | || ||||| || || || Sbjct 24799 GCCTTAATATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTC 24858 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | ||||||||||||||||||||| Sbjct 24859 AAAGTTTTCACAAAAATCTGCAT 24881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420432080727548