Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq64140 733 0.0 >seq64140 Length=931 Score = 733 bits (812), Expect = 0.0 Identities = 711/914 (78%), Gaps = 0/914 (0%) Strand=Plus/Plus Query 508 AAGAACCTGATGGACATGTTCAGGGATCGCCAGGCGTTTTCTGAGCATACCTGGAAAATG 567 |||||||||||||||||||||||||| | ||||| || ||||| || |||||||| ||| Sbjct 7 AAGAACCTGATGGACATGTTCAGGGACAGGCAGGCCTTCTCTGAACACACCTGGAAGATG 66 Query 568 CTTCTGTCCGTTTGCCGGTCGTGGGCGGCATGGTGCAAGTTGAATAACCGGAAATGGTTT 627 || ||||| || ||| | || ||||| || ||||||||| |||| ||| |||||||||| Sbjct 67 CTCCTGTCTGTGTGCAGATCCTGGGCTGCCTGGTGCAAGCTGAACAACAGGAAATGGTTC 126 Query 628 CCCGCAGAACCTGAAGATGTTCGCGATTATCTTCTATATCTTCAGGCGCGCGGTCTGGCA 687 || || |||||||| ||||| | || || || || || || || || | || ||||| Sbjct 127 CCTGCTGAACCTGAGGATGTGAGGGACTACCTCCTGTACCTGCAAGCCAGAGGCCTGGCT 186 Query 688 GTAAAAACTATCCAGCAACATTTGGGCCAGCTAAACATGCTTCATCGTCGGTCCGGGCTG 747 || || || ||||| || || |||||||||| |||||||| || | | || || ||| Sbjct 187 GTGAAGACCATCCAACAGCACCTGGGCCAGCTCAACATGCTGCACAGGAGATCTGGCCTG 246 Query 748 CCACGACCAAGTGACAGCAATGCTGTTTCACTGGTTATGCGGCGGATCCGAAAAGAAAAC 807 || || || |||| ||||||||| || ||||| ||| || | ||| |||| || || Sbjct 247 CCTCGCCCTTCTGACTCCAATGCTGTGTCCCTGGTGATGAGGAGAATCAGAAAGGAGAAT 306 Query 808 GTTGATGCCGGTGAACGTGCAAAACAGGCTCTAGCGTTCGAACGCACTGATTTCGACCAG 867 || ||||| || || | || || ||||| || || || ||||||||||| || ||||| Sbjct 307 GTGGATGCTGGGGAGAGAGCCAAGCAGGCCCTGGCCTTTGAACGCACTGACTTTGACCAA 366 Query 868 GTTCGTTCACTCATGGAAAATAGCGATCGCTGCCAGGATATACGTAATCTGGCATTTCTG 927 || | || || ||||| || || | |||||||| || | || ||||| || ||| Sbjct 367 GTCAGATCCCTGATGGAGAACTCTGACAGATGCCAGGACATCAGGAACCTGGCCTTCCTG 426 Query 928 GGGATTGCTTATAACACCCTGTTACGTATAGCCGAAATTGCCAGGATCAGGGTTAAAGAT 987 || ||||| || ||||||||| | || || |||||||||||||| ||||| || || || Sbjct 427 GGCATTGCCTACAACACCCTGCTGCGCATTGCCGAAATTGCCAGAATCAGAGTGAAGGAC 486 Query 988 ATCTCACGTACTGACGGTGGGAGAATGTTAATCCATATTGGCAGAACGAAAACGCTGGTT 1047 ||||| || || || |||||||||||| | ||||| |||||||| || || || ||||| Sbjct 487 ATCTCCCGCACCGATGGTGGGAGAATGCTGATCCACATTGGCAGGACCAAGACCCTGGTG 546 Query 1048 AGCACCGCAGGTGTAGAGAAGGCACTTAGCCTGGGGGTAACTAAACTGGTCGAGCGATGG 1107 ||| || ||||| |||||||| || ||||||||| || || ||||| ||| ||||| Sbjct 547 TCCACAGCTGGTGTGGAGAAGGCCCTGTCCCTGGGGGTTACCAAGCTGGTGGAGAGATGG 606 Query 1108 ATTTCCGTCTCTGGTGTAGCTGATGATCCGAATAACTACCTGTTTTGCCGGGTCAGAAAA 1167 || || || |||||||| |||||||| || || ||||||||||| |||||||||||||| Sbjct 607 ATCTCTGTGTCTGGTGTGGCTGATGACCCCAACAACTACCTGTTCTGCCGGGTCAGAAAG 666 Query 1168 AATGGTGTTGCCGCGCCATCTGCCACCAGCCAGCTATCAACTCGCGCCCTGGAAGGGATT 1227 |||||||| || || || ||||||||| ||| || || || || |||||||||||||| Sbjct 667 AATGGTGTGGCTGCCCCTTCTGCCACCTCCCAACTGTCCACCCGGGCCCTGGAAGGGATC 726 Query 1228 TTTGAAGCAACTCATCGATTGATTTACGGCGCTAAGGATGACTCTGGTCAGAGATACCTG 1287 ||||| || || || || |||| || || || |||||||||||||| |||||||||||| Sbjct 727 TTTGAGGCCACCCACCGCCTGATCTATGGTGCCAAGGATGACTCTGGGCAGAGATACCTG 786 Query 1288 GCCTGGTCTGGACACAGTGCCCGTGTCGGAGCCGCGCGAGATATGGCCCGCGCTGGAGTT 1347 ||||||||||| ||| |||| | || || || || | || |||||| | ||||| || Sbjct 787 GCCTGGTCTGGCCACTCTGCCAGAGTGGGTGCTGCCAGGGACATGGCCAGGGCTGGTGTG 846 Query 1348 TCAATACCGGAGATCATGCAAGCTGGTGGCTGGACCAATGTAAATATTGTCATGAACTAT 1407 || || || || |||||||| |||||||||||||||||||| || ||||| |||||||| Sbjct 847 TCCATCCCTGAAATCATGCAGGCTGGTGGCTGGACCAATGTGAACATTGTGATGAACTAC 906 Query 1408 ATCCGTAACCTGGA 1421 ||| | |||||||| Sbjct 907 ATCAGAAACCTGGA 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302645561806908