Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq66230 118 6e-22 seq77188 116 2e-21 seq68434 116 2e-21 seq10263 116 2e-21 seq94018 113 2e-20 seq82351 113 2e-20 seq70009 113 2e-20 seq109238 111 8e-20 seq93073 111 8e-20 seq89782 111 8e-20 seq78680 111 8e-20 seq73957 111 8e-20 seq71647 111 8e-20 seq70211 111 8e-20 seq13757 111 8e-20 seq155738 109 3e-19 seq99129 109 3e-19 seq81801 109 3e-19 seq108583 107 1e-18 seq69841 102 4e-17 seq70717 89.7 3e-13 >seq66230 Length=111146 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| ||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 71049 AATAAAATATCGTACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 70990 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 70989 GACGCTCTAACCAACTGAGCTAATGGGCC 70961 >seq77188 Length=39662 Score = 116 bits (128), Expect = 2e-21 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| | ||||| | ||||||||||| | | |||||||| ||||||||||||||||| Sbjct 29668 AACTAAAAGAAAATAATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 29609 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 29608 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 29576 >seq68434 Length=236228 Score = 116 bits (128), Expect = 2e-21 Identities = 78/87 (90%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| |||| |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 156303 AAAAAGCAAACGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 156244 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 156243 CGCTCTAACCAACTGAGCTAATGGGCC 156217 >seq10263 Length=4289 Score = 116 bits (128), Expect = 2e-21 Identities = 83/94 (88%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 11441 AATAAAAA-ATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||| || ||||| |||||||| | | |||||||| |||||||||||||||||| Sbjct 1644 AATAAAACGATAAAATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 1703 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| |||||||||||||||||||||| Sbjct 1704 CACGACGCTCTAACCAACTGAGCTAATGGGCCGT 1737 >seq94018 Length=120178 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 49234 AAAATATTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 49175 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 49174 TCTAACCAACTGAGCTAATGGGCC 49151 >seq82351 Length=35845 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| | |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 22182 AAAATAGATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 22123 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 22122 TCTAACCAACTGAGCTAATGGGCC 22099 >seq70009 Length=182838 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 53657 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 53716 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 53717 TGAGCTAATGGGCCGT 53732 >seq109238 Length=23181 Score = 111 bits (122), Expect = 8e-20 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATT-----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||||||| | ||| |||||||| | | |||||||| ||||||||||||||||| Sbjct 20408 ATAAAAAATTAGATTATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 20467 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 20468 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 20500 >seq93073 Length=106145 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| | | | ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 59351 AATAAAAAGTTGATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 59292 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 59291 CGACGCTCTAACCAACTGAGCTAATGGGCC 59262 >seq89782 Length=66419 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 49321 AACTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 49262 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 49261 CAACTGAGCTAATGGGCC 49244 >seq78680 Length=97519 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 13671 TTGGCCCATGCAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 13612 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 13611 CTGAGCTAATGGGCC 13597 >seq73957 Length=8192 Score = 111 bits (122), Expect = 8e-20 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 5627 TAGTAAAAAGGAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 5686 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||||||||| Sbjct 5687 CAACGCTCTAACCAACTGAGCTAATGGGCC 5716 >seq71647 Length=265427 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 118479 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 118420 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 118419 CTGAGCTAATGGGCC 118405 >seq70211 Length=95578 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 30945 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 30886 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 30885 CTGAGCTAATGGGCC 30871 >seq13757 Length=320656 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 149954 AAAACAAAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 150013 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 150014 CTCTAACCAACTGAGCTAATGGGCC 150038 >seq155738 Length=65281 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 22665 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 22724 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 22725 TGAGCTAATGGGCC 22738 >seq99129 Length=34286 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7862 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7803 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 7802 TGAGCTAATGGGCC 7789 >seq81801 Length=37876 Score = 109 bits (120), Expect = 3e-19 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 18567 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 18508 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| Sbjct 18507 CCAACTGAGCTAATGGGCC 18489 >seq108583 Length=31670 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||| | ||||||||||||||||||||||||||||| || Sbjct 22889 AAAATGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 22948 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 22949 CAACTGAGCTAATGGGCC 22966 >seq69841 Length=137764 Score = 102 bits (112), Expect = 4e-17 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCG-AACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||| | | ||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 24080 TGGCCCATGCAGGTCTCGGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 24021 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 24020 CTGAGCTAATGGGCC 24006 >seq70717 Length=101802 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| ||| | || |||||| | | |||||||| ||||||||||||||||| ||| | Sbjct 25526 AAAAAGCAAGAAATGTCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTATCACAA 25585 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 25586 CGCTCAAACCAACTGAGCTAATAGGCC 25612 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260982732649648