Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq100134 140 5e-29 seq64222 136 6e-28 seq102454 131 3e-26 seq133461 125 1e-24 seq68702 123 4e-24 seq101718 120 5e-23 seq134139 96.9 5e-16 seq134838 84.2 3e-12 >seq100134 Length=52142 Score = 140 bits (154), Expect = 5e-29 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| |||||||| ||| | ||| |||| ||| | || Sbjct 37164 CTCCGCGATAACATCCAAGGTATCACAAAGCCAGCAATCAGGCGTTTGGCGCGTAGAGGA 37105 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || |||| || |||| || |||| |||| || |||||||||| Sbjct 37104 GGAGTGAAGCGTATCAGTGGACTGATCTACGAGGAGACACGTGGCGTGCTGAAGATCTTT 37045 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| || | ||||||| | || || |||||||| | | ||||| || Sbjct 37044 CTGGAAAACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCGAGGAGGAAGACGGTG 36985 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || | ||| | |||||||||| | ||||| ||||| Sbjct 36984 ACTGCTATGGATGTTGTGTACGCGCTCAAAAGGCAAGGCCGTACTCTCTATGGATTTGGT 36925 Query 16694 AGTTA 16698 |||| Sbjct 36924 GGTTA 36920 Score = 129 bits (142), Expect = 9e-26 Identities = 179/248 (72%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||| || ||||| || | ||| |||||||| | || Sbjct 40401 CTTCGTGATAACATCCAAGGTATCACGAAACCAGCAATTAGGCGTTTGGCTCGTAGAGGA 40342 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || |||| | ||||||| |||| |||| || |||||||||| Sbjct 40341 GGAGTGAAGCGTATCAGTGGACTCATCTATGAGGAGACACGTGGCGTGCTGAAGATCTTT 40282 Query 16574 CTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | || || | ||||||| || || || || ||||||||| | |||||||| Sbjct 40281 TTGGAAAATGTGATTCGTGATGCTGTTACA-TACACTGAGCACGCTCGTAGAAAGACTGT 40223 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| | || | || || | | | ||||| ||||| Sbjct 40222 GACTGCTATGGATGTTGTTTATGCTCTCAAGAGACAGGGAAGGACTTTGTATGGATTTGG 40163 Query 16693 AAGTTAAT 16700 | |||||| Sbjct 40162 AGGTTAAT 40155 >seq64222 Length=156881 Score = 136 bits (150), Expect = 6e-28 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || ||||||||||| ||| | || |||||| | ||||| ||| Sbjct 145835 GATAACATCCAGGGAATTACAAAGCCAGCTATTCGTAGACTTGCTCGTAGGGGTGGTGTC 145894 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| ||| | ||||| |||| |||| || | |||||||| | || Sbjct 145895 AAGCGTATTTCTGGGTTGATTTATGAGGAGACACGTGGAGTGCTTAAGATCTTTTTGGAG 145954 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | ||| || |||||||||| | |||||||| || | Sbjct 145955 AATGTGATTCGTGATGCTGTGACCTACACTGAGCACGCTAGGAGAAAGACTGTTACTGCT 146014 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || | || | || || | | | ||||| |||||| ||||| Sbjct 146015 ATGGATGTTGTGTACGCTCTCAAGAGGCAGGGAAGGACCTTGTATGGATTTGGAGGTTAA 146074 >seq102454 Length=45535 Score = 131 bits (144), Expect = 3e-26 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || |||||||| || ||||| |||||||| | || || || Sbjct 5257 GATAACATCCAGGGAATTACGAAGCCAGCCATTCGTCGGTTGGCTCGTAGGGGAGGCGTG 5198 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| || |||| || |||| |||| || ||||||||||| || || Sbjct 5197 AAGCGTATATCTGGTCTGATCTACGAGGAGACACGTGGAGTGTTGAAGATCTTTCTAGAG 5138 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | ||| || ||||| || | | || ||||| || | Sbjct 5137 AACGTGATTCGTGATGCTGTTACCTACACTGAGCATGCCAGGAGAAAAACTGTTACTGCT 5078 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || |||||| | || | || || | | | ||||| ||||| ||||| Sbjct 5077 ATGGATGTTGTGTATGCACTCAAGAGGCAGGGTAGGACTCTCTATGGATTTGGTGGTTAA 5018 >seq133461 Length=60547 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || || || ||||||||||| ||| | || |||||| | ||||| | Sbjct 20036 GAGATAACATCCAGGGGATTACAAAGCCAGCTATTCGTAGGCTTGCTCGTAGGGGTGGTG 19977 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||||| ||| | || || |||| |||| || | |||||||| | Sbjct 19976 TCAAGCGTATTTCTGGGTTGATTTACGAGGAGACACGTGGAGTGCTTAAGATCTTTTTGG 19917 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | ||| || |||||||||| | |||||||| || Sbjct 19916 AGAATGTGATTCGTGATGCTGTGACCTACACTGAGCACGCTAGGAGAAAGACTGTTACTG 19857 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || || || | || | || || | | | || || |||||| ||| Sbjct 19856 CTATGGATGTTGTGTACGCTCTCAAGAGGCAGGGAAGGACCTTGTACGGATTTGGAGGTT 19797 Query 16698 AA 16699 || Sbjct 19796 AA 19795 >seq68702 Length=266212 Score = 123 bits (136), Expect = 4e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| |||||||| ||||| || || || ||| |||||||| | || Sbjct 133294 CTCCGTGATAACATCCAGGGAATCACTAAGCCTGCAATTCGGCGTTTGGCTCGTAGAGGA 133353 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| | ||||| ||| | || || |||| || | ||||||||||| || Sbjct 133354 GGAGTGAAACGTATTTCTGGTTTGATTTACGAGGAGACACGAGGGGTTTTGAAGATATTT 133413 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | || || |||||||||| | |||||||| Sbjct 133414 TTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTT 133473 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 133474 ACTGCTATGGATGTTGTTTATGC 133496 Score = 120 bits (132), Expect = 5e-23 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || |||||||| ||||| || || || ||| |||||||| | || || | Sbjct 130384 GAGACAACATTCAGGGAATCACTAAGCCTGCAATTCGGCGTTTGGCTCGTAGGGGAGGGG 130443 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| | ||||| ||| | || || |||| ||||| || |||||||| || | Sbjct 130444 TGAAGCGCATTTCTGGTTTGATTTACGAGGAGACTCGTGGAGTGTTGAAGATATTTTTGG 130503 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | || || || ||||||| | ||||||||||| Sbjct 130504 AGAATGTGATTCGTGATGCTGTGACTTACACTGAACACGCTAGGAGGAAGACTGTCACTG 130563 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || ||| | || | || || | | |||| || ||||| ||| Sbjct 130564 CCATGGATGTTGTTTACGCACTCAAGAGGCAGGGTAGGACCCTTTACGGATTTGGGGGTT 130623 Query 16698 A 16698 | Sbjct 130624 A 130624 >seq101718 Length=33046 Score = 120 bits (132), Expect = 5e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || ||||| || || || || |||||||| | || || || Sbjct 9368 GATAACATCCAGGGAATTACGAAGCCCGCAATTCGGCGATTGGCTCGTAGGGGAGGTGTG 9309 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||| ||| |||| || |||| |||| || ||||||||||| || || Sbjct 9308 AAGCGTATTAGTGGGTTGATCTACGAGGAGACACGTGGCGTGTTGAAGATCTTTCTAGAG 9249 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | ||| || |||||||| | | || ||||| || | Sbjct 9248 AACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCCAGGAGAAAAACTGTTACTGCT 9189 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || || ||| | || | || ||| | | | ||||| ||||| |||| Sbjct 9188 ATGGATGTTGTTTACGCACTCAAGAGGCAGGGCAGGACTCTCTATGGATTTGGTGGTTA 9130 >seq134139 Length=29322 Score = 96.9 bits (106), Expect = 5e-16 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| || |||||||| ||||||||||| || | | || | | || Sbjct 20481 TCTGCGTGATAACATTCAGGGAATCACAAAGCCAGCTATTCGGAGATTAGCGAGAAGAGG 20540 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| ||| | || || || | ||||| |||| | | | || ||||||| || Sbjct 20541 TGGAGTGAAGAGAATCAGCGGGCTGATTTATGAGGAGACTAGAGGAGTCCTGAAGATATT 20600 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | || || | ||||||| | || || |||||||||| | |||||||| Sbjct 20601 TTTGGAAAATGTGATTCGTGATGCTGTTACTTACACTGAGCACGCTAGGAGAAAGACTGT 20660 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||| | |||| | |||||| | | ||||||| ||||| Sbjct 20661 GACTGCAATGGATGTTGTTTATTCTCTGAAGAGACAAGGCAGGACTCTTTATGGATTTGG 20720 Query 16693 AAGTTAAT 16700 | ||| || Sbjct 20721 AGGTTGAT 20728 Score = 96.9 bits (106), Expect = 5e-16 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || ||||| || ||||| ||||| | | | || | | ||| Sbjct 24657 CTCCGTGATAACATTCAGGGAATTACTAAGCCTGCTATTAGGAGATTAGCGAGAAGAGGT 24716 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || | |||||||||| | | ||||||||||| || Sbjct 24717 GGAGTGAAGAGAATCAGCGGTCTGATTTATGAAGAGACGAGAGGAGTTTTGAAGATATTT 24776 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | || || |||||||||| | |||||||| Sbjct 24777 TTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTT 24836 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || | ||||| | |||||| | | ||||||||||||| Sbjct 24837 ACTGCAATGGATGTTGTTTACTCTTTGAAGAGACAAGGCAGGACTCTTTATGGTTTTGGT 24896 Query 16694 AGTTAA 16699 ||||| Sbjct 24897 GGTTAA 24902 >seq134838 Length=136684 Score = 84.2 bits (92), Expect = 3e-12 Identities = 168/249 (67%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || ||||| || ||||| ||||| | | || ||| | | || ||| Sbjct 130207 CGTGACAATATTCAGGGAATTACAAAGCCTGCTATTAGGAGGCTAGCTAGAAGAGGCGGA 130266 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | | |||||| | || ||||||| |||| || ||||||||||| || Sbjct 130267 GTGAAGAGAATTAGCGGATTGATTTACGAAGAGACACGTGGAGTGTTGAAGATCTTTCTA 130326 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| | |||||| ||||| |||| | |||||||| || Sbjct 130327 GAAAATGTGATTCGTGATGCTGTGACCTATACTGAGCATGCTAGGAGAAAGACTGTTACT 130386 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||| | | || | || || | | | ||||| ||||| || Sbjct 130387 GCTATGGATGTTGTTTATTCGCTCAAGAGACAGGGTAGGACTCTATATGGATTTGGTGGT 130446 Query 16697 TAATCTTCT 16705 ||| |||| Sbjct 130447 TAAATTTCT 130455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78929324146764