Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq68600 104 2e-17 seq67887 98.7 9e-16 seq73737 93.3 4e-14 seq102184 89.7 5e-13 seq68234 84.2 2e-11 seq11802 84.2 2e-11 seq35257 82.4 7e-11 >seq68600 Length=37585 Score = 104 bits (114), Expect = 2e-17 Identities = 163/229 (71%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| |||||||||| | || || |||| | | || | Sbjct 35304 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTAACTC---C 35248 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| ||| ||| ||||| ||||| || ||||| |||||| Sbjct 35247 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 35188 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTATA 26946 ||||| | |||| | || |||||||| ||||||| | ||| || | || || || | Sbjct 35187 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAATACTT--GCTGATTACA 35130 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||| || || || ||| ||||||| || || | ||| | ||||| Sbjct 35129 ATATTCAGAAGGACTCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 35081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | |||||||| | || || |||| | || Sbjct 32582 ATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATAACACTCGAGGTTGAGAGTTCT 32523 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| ||||||| ||||| ||||| || |||| |||||| Sbjct 32522 GACACTATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCTAGATCAA 32463 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTATA 26946 ||||| | |||| | || |||||||||| |||| | ||| || | || || |||| Sbjct 32462 CAAAGGTTGATTTTTGCTGGAAAACAACTCGGGGATGGTCGAACACTT--GCTGATTATA 32405 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||| || ||||| || ||||||| || | | ||| | ||||| Sbjct 32404 GCATTCAGAAGGAATCCACACTCCATCTTGTGTTACGTCTTCGCGGAGG 32356 >seq67887 Length=198949 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||||||||||| | || ||| | || | ||| | Sbjct 191409 ATGCAGATCTTCGTTAAAACCTTAACTGGAAAGACCATAACCCTTGAGGTTGAAAGCTCC 191350 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || |||||| ||||||||||| || || || || || Sbjct 191349 GACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGAATCCCACCGGACCAG 191290 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | || ||| || || |||||||| | |||| | | |||||| ||| Sbjct 191289 CAAAGGCTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCAGAACCCTAGCCGACTACAAC 191230 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || | || |||| || | ||||||||||| Sbjct 191229 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTAGAGGAGG 191183 >seq73737 Length=23676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | ||||| ||||| |||||||||||| | ||||| | ||| | || | | Sbjct 13689 AATGCAAATCTTTGTTAAAACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13630 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | ||||| || || | || || ||||| || |||||||| || || || || | Sbjct 13629 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 13571 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTA 26944 | || || ||||| | | || ||||| | || |||| ||| | || | || ||||| Sbjct 13570 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTT--GCTGACTA 13513 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||| || || || |||| || ||||| | ||| | || |||| Sbjct 13512 TAACATTCAAAAGGAGTCAACACTCCACCTAGTCCTCCGCCTTCGTGGTGGAA 13460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | ||||| || || |||||||||||| | ||||| | ||| | || | | Sbjct 13917 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13858 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | ||||| || || | || || ||||| || |||||||| || || || || | Sbjct 13857 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 13799 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTA 26944 | || || ||||| | | || ||||| | || |||| ||| | || | || ||||| Sbjct 13798 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTT--GCTGACTA 13741 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||| || || || |||| || ||||| | ||| | || |||| Sbjct 13740 TAACATTCAAAAGGAGTCAACACTCCACCTAGTCCTCCGCCTTCGTGGTGGAA 13688 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | ||||| || || |||||||||||| | ||||| | ||| | || | | Sbjct 13301 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13242 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | ||||| || || | || || ||||| || |||||||| || || || || | Sbjct 13241 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 13183 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | || || ||||| | | || ||||| | || |||| ||| | | ||||| | Sbjct 13182 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACA 13123 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 | || || || || |||||| ||||||| || ||||| || || || ||| Sbjct 13122 ATATCCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 13073 >seq102184 Length=23720 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | ||||| ||||| | |||||||| | || || | || | || | | | Sbjct 2370 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 2311 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | ||||| |||||| ||||| || || || ||||| ||||| Sbjct 2310 -GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATCA 2252 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||| | |||| | ||||| ||||| ||||||| ||||| | || || || Sbjct 2251 ACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTGCTGATTACAA 2192 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || ||||||| ||||| Sbjct 2191 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 2159 >seq68234 Length=173017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 26857 TTACC--GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACA 26914 ||||| |||||||||||||||||||| || || || || || |||| | || ||||| Sbjct 57494 TTACCAGGACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACA 57435 Query 26915 ACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCT 26974 | ||||||| | ||| | || || || || || |||||||| || | || || Sbjct 57434 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCT 57375 Query 26975 GGTCCTGAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| |||| || |||||||| || |||||||| Sbjct 57374 GGTTTTGAGGCTCAGAGGAGG--AACTATGATTA 57343 >seq11802 Length=78489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || ||||| ||| | || || | ||| | || Sbjct 56753 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTCGAGAGCTCG 56694 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||||| || || |||||||| || || || || Sbjct 56693 GACACCATCGACAATGTAAAGGCAAAGATTCAAGATAAGGAAGGGATTCCACCTGACCAG 56634 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || |||| | || || || || ||||||| || || ||| || || || Sbjct 56633 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAAGATGGAAG-GACACTAGCTGATTACAA 56575 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || |||||||||| ||||| || || || || Sbjct 56574 TATCCAGAAGGAATCCACCCTCCATCTGGTGCTGAGGCTGAGGGGTGG 56527 >seq35257 Length=66376 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || ||||| || ||| | ||||| | ||| | || Sbjct 1029 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 970 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 969 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 910 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | | || || ||| | ||||||| || | || |||||||| Sbjct 909 GCAGAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTCGCTGACTATAA 850 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || || |||| || ||||| | ||| | || |||| Sbjct 849 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGGAA 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477707779642560