Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq75959 107 5e-18 seq68163 95.1 3e-14 seq113574 84.2 6e-11 >seq75959 Length=145061 Score = 107 bits (118), Expect = 5e-18 Identities = 352/541 (65%), Gaps = 12/541 (2%) Strand=Plus/Minus Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 |||| ||||| ||| | ||||||||||| || ||||| ||||| || |||||| | Sbjct 63499 CATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 63440 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATG 22600 | ||||| || || ||| ||||||| || | | ||||| || |||| || || || | Sbjct 63439 TCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACG 63380 Query 22601 AGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660 |||| ||| | || || ||| | || |||||||| ||| |||| ||| | | Sbjct 63379 AGTTGATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTTTAT---AGTT 63323 Query 22661 ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAAC 22720 | | || ||| | | ||| || | ||| || || |||| || || Sbjct 63322 TGTTAAGGACGAAGCTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGATGCTGTGGAGA 63263 Query 22721 TTGAACGTCTATTTATTTGCGAGGCGTTACC-AGTAAGTCTCATTGGTATCAATGCCGAA 22779 | ||| | ||| | || || ||| | || || | || | || || |||| || Sbjct 63262 TAGAAAGGGAGTTTGTGTGTGACGCGCTGCCTTGTGCG-CTGGTGGGAATGAATGGAGAT 63204 Query 22780 TCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCA 22839 | ||||| | ||| ||| |||| || || ||| | | || | | | ||||||| Sbjct 63203 TTGATGAGCAAATACATTGAATTCGTGGCTGATAGATTGTTGGATGCTTTGGGTTATGAT 63144 Query 22840 AAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899 ||| || || | ||||| ||||| |||||||| || ||| | |||| ||| Sbjct 63143 AAGTTGTACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTTACAAGGGAAG 63084 Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCA--T 22957 || |||||||| || || |||||||| || || || ||||| ||||||| | || | Sbjct 63083 ACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGAAAGCTTCTGTTATG--TCCAGTT 63026 Query 22958 TGAATG---ATAGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAATTATTTGTAT 23014 |||||| || || | | || | || | || |||||||| || ||| | || |||| Sbjct 63025 TGAATGGGAATGGTGCTACTCATGAGTTCAAGTTGGATGAAGACTTCTAAATTTTAGTAT 62966 Query 23015 T 23015 | Sbjct 62965 T 62965 >seq68163 Length=100544 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 111689 TCATCTTATG-TGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGC 111747 ||||||| || | ||||| |||||| | ||||| | | || || || |||||||||| Sbjct 39613 TCATCTTGTGGTTGCAGTTCTATGTAGCCAACGGGGAGTTATCCTGTCAGATGTATCAGC 39672 Query 111748 GATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTT 111807 ||||||||||||| ||||| || || || ||||| |||||| ||| || | || || | Sbjct 39673 GATCTGCTGATATGGGTCTGGGAGTGCCATTTAACATTGCATCTTATGCGTTGCTGACAT 39732 Query 111808 GCTTAATCGCTCATTTT 111824 || | || |||||| || Sbjct 39733 GCATGATAGCTCATGTT 39749 >seq113574 Length=79877 Score = 84.2 bits (92), Expect = 6e-11 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || |||||||| | ||| || |||||| | |||||| ||||| ||| || || ||| Sbjct 17244 ATTGAGGGTATATATGATACTCTTAAGGAGTGTGCTGTTATTAGCAAATCAGCTGGGGGA 17185 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCAC-AGGGGG 363755 ||||| || || | ||||| | ||||| ||||||||||| || || | ||| Sbjct 17184 ATTGGAGTTTCTGTGCACAACATACGTGCTATTGGGAGTTACATTCGTGGAACAAATGGG 17125 Query 363756 ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGA 363815 | | || ||||| | ||||| ||||| ||||| || | | ||||| || || || || Sbjct 17124 ACA-TCAAATGGAATTGTTCCTATGCTGCGTGTATTCAATGACACTGCTAGATATGTTGA 17066 Query 363816 CCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| || || || || | |||||| Sbjct 17065 CCAAGGAGGTGGCAAAAG-AAAGGG 17042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300689273166536