Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq35257 111 1e-19 seq67887 104 2e-17 seq11802 104 2e-17 seq102184 98.7 9e-16 seq91242 91.5 1e-13 seq73737 87.8 2e-12 seq107061 84.2 2e-11 seq51332 84.2 2e-11 >seq35257 Length=66376 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||||||||||| | ||||| | ||||| ||| | Sbjct 1484 ATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATTACATTGGAAGTTGAGAGCTCA 1425 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || || || || ||||| || || || || || Sbjct 1424 GACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCAG 1365 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||||| || || |||||| | ||||||| |||| || || |||||||| Sbjct 1364 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAA-CGCTGGCTGATTATAA 1306 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || |||||||| |||| | || | ||||||||||| || Sbjct 1305 CATCCAGAAGGAATCTACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 1258 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || ||||| || ||| | || || | ||||| ||| | Sbjct 1029 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 970 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || ||| ||| ||||| |||||||| || || ||||| Sbjct 969 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 910 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||| | | || |||||| | ||||||| || | || || ||||| Sbjct 909 GCAGAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTCGCTGACTATAA 850 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||| || || ||| | || |||| Sbjct 849 CATTCAAAAGGAGTCAACACTCCACCTAGT 820 >seq67887 Length=198949 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||||||||| | || ||| | || || || | | Sbjct 191409 ATGCAGATCTTCGTTAAAACCTTAACTGGAAAGACCATAACCCTTGAGGTTGAAAGCTCC 191350 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || |||||| ||||||||||| || || || || || Sbjct 191349 GACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGAATCCCACCGGACCAG 191290 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | || ||| ||||| |||||||| | ||||| | | ||| || ||| Sbjct 191289 CAAAGGCTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCAGAACCCTAGCCGACTACAAC 191230 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || |||| || ||| | | | |||||||| Sbjct 191229 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTAGAGGAGG 191183 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||| ||| | |||||| | ||||| || | Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || |||||| ||||| ||||| || || || ||||| Sbjct 191121 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 191062 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| ||||| | ||||| | | ||| || |||||| ||| Sbjct 191061 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTACAAC 191002 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || | || || ||| Sbjct 191001 ATTCAAAAGGAGTCCACTCTCCACTTGGTG 190972 >seq11802 Length=78489 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || || ||| | || ||| | || || ||| | Sbjct 56069 ATGCAGATCTTTGTGAAGACATTGACAGGGAAAACTATCACCCTTGAGGTTGAGAGTTCC 56010 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| || ||| || || ||||| || || || || || Sbjct 56009 GACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCTGACCAG 55950 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | || |||||||| || |||| || | | ||||||||| Sbjct 55949 CAGAGGTTGATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACTCTTGCTGATTATAAC 55890 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| || ||| | ||||| ||| | ||||||||||||| Sbjct 55889 ATCCAGAAAGAGTCCACACTCCATTTGGTGCTCCGATTGAGAGGAGG 55843 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||||||| | Sbjct 56753 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTCGAGAGCTCG 56694 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||||| || || ||||| || || || || || Sbjct 56693 GACACCATCGACAATGTAAAGGCAAAGATTCAAGATAAGGAAGGGATTCCACCTGACCAG 56634 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || |||| | || ||||| || ||||||| || || ||| ||||| || Sbjct 56633 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAAGATGGAAG-GACACTAGCTGATTACAA 56575 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | ||| | || |||| || || Sbjct 56574 TATCCAGAAGGAATCCACCCTCCATCTGGTGCTGAGGCTGAGGGGTGG 56527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || |||||||| || ||| | |||||| | || || ||| | Sbjct 56525 ATGCAAATCTTTGTGAAGACATTAACAGGGAAAACCATTACCCTTGAGGTTGAGAGCTCG 56466 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| || ||| || || ||||| || || || || || Sbjct 56465 GACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCTGACCAG 56406 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||||| | || || || || || |||| || | | | ||| |||||||| Sbjct 56405 CAGAGGTTGATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGA-CTTTAGCTGATTATAA 56347 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || ||||| || | ||||| ||| Sbjct 56346 CATCCAGAAGGAATCAACCCTCCATTTGGTG 56316 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || |||| ||| | || || ||| | Sbjct 55841 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACGATCACCCTGGAGGTTGAGAGCTCG 55782 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || ||||||| ||||| || || || || || || || Sbjct 55781 GATACCATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 55722 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| | || ||||| || || |||| | | | | ||||||||| Sbjct 55721 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCTGATTATAAC 55662 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| |||||||| || |||| Sbjct 55661 ATTCAGAAAGAATCAACTCTTCA 55639 >seq102184 Length=23720 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | |||||||| | ||||| | || |||||| | Sbjct 2370 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 2311 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| || || || ||||| |||||| Sbjct 2310 GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATCAA 2251 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | ||||||||||| ||||||| |||| | ||||| ||| Sbjct 2250 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTGCTGATTACAAC 2191 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 2190 ATCCAGAAGGAGTCCAC 2174 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCCA 24048 ||||| | ||||| || ||| | || || || | || ||| | ||||| || | || Sbjct 2142 ATGCAGATCTTTGTCAAGACACTTACCGGCAAGACCATCACCCTTGAAGTTGAAAGTTCA 2083 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 || || ||||| | || ||| ||||||| ||||| ||||| || ||||| || | Sbjct 2082 --GATACTATCGACAATGTAAAAGCAAAGATTCAAGACAAGGAAGGTATTCCTCCGGACC 2025 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTAT 24167 | ||||||||||| | | ||| |||||||| || || | || || | || ||||| Sbjct 2024 AGCAGAGACTGATCTTTGCCGGGAAGCAACTTGAGGACGGGAG-GACATTGGCAGATTAC 1966 Query 24168 AACATTCAAAAAGAATCTAC 24187 |||||||| ||||| || || Sbjct 1965 AACATTCAGAAAGAGTCAAC 1946 >seq91242 Length=50504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | || |||||| | ||||| |||| || ||| | Sbjct 25337 ATGCAAATCTTTGTAAAGACGCTTACCGGAAAAACCATTACTCTCGAGGTTGAGAGTTCC 25278 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| ||||| ||||| || ||||||||||| Sbjct 25277 GACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGAATCCCTCCCGATCAG 25218 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || || |||| | | | | ||| || ||| Sbjct 25217 CAGAGGTTGATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCCGACTACAAC 25158 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| ||||| || |||| Sbjct 25157 ATCCAAAAGGAATCCACCCTTCA 25135 >seq73737 Length=23676 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||||||| | || || | || || ||| | Sbjct 14373 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAGGTTGAGAGCTC 14314 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| ||||| || || || || || ||||| Sbjct 14313 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCA 14254 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||||| | || |||||| | ||||||| |||| | |||||||| Sbjct 14253 GCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 14194 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || |||| | || | || ||||| || || Sbjct 14193 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGGTTGAGGGGTGG 14146 >seq107061 Length=185541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||||| || ||||||||||||||||| ||||| ||||||||||||| | || || || Sbjct 85916 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 85857 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | ||||||| | | | | ||||| |||||||| |||||||| || |||| | Sbjct 85856 GTTGGAAGATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCT 85797 Query 24197 AGTGTTAAGATTGAGAGGAGG-ACTATAAT 24225 || || || | || ||||| ||||| || Sbjct 85796 TGTTTTGAGGCTCAGGGGAGGAACTATGAT 85767 >seq51332 Length=333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || ||||| || || || || || ||||| ||||||| || || |||||| | ||| Sbjct 64 GATAAGGAAGGTATCCCGCCAGACCAGCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAA 123 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| |||| || || ||||||||||| || || |||||||| |||| | || | Sbjct 124 GATGGAAGAA-CGCTGGCTGATTATAACATCCAGAAGGAATCTACCCTTCACCTTGTTCT 182 Query 24203 AAGATTGAGAGGAGG 24217 ||||||||||| || Sbjct 183 CAGATTGAGAGGTGG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429099993209940