Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq67887 95.1 1e-14 seq35257 95.1 1e-14 seq107061 93.3 4e-14 seq73737 86.0 5e-12 >seq67887 Length=198949 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| || || || ||||| |||||| | ||| ||| | Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| || || ||||| |||| ||||| Sbjct 191121 GACACAATTG-ACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 191063 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| || || || || ||||| | | ||| | |||||||| || Sbjct 191062 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTACAA 191003 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||| ||||| ||| | || ||||| Sbjct 191002 CATTCAAAAGGAGTCCACTCTCCACTTGGTG 190972 >seq35257 Length=66376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| | || |||||||||||||| | ||| ||| | Sbjct 1484 ATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATTACATTGGAAGTTGAGAGCTCA 1425 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || ||||| ||||| ||||| |||| || ||| Sbjct 1424 GACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCAG 1365 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| || || || ||||||||||||| | ||| |||| ||||||||| Sbjct 1364 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAAC 1305 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || ||||| | || | || | |||||| |||| || Sbjct 1304 ATCCAGAAGGAATCTACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 1258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| || || | || || ||||| || || | ||| ||| | Sbjct 1029 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 970 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || ||||||| || || |||||| |||| |||| Sbjct 969 GGACACGATTG-ACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATC 911 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || || || | ||| || || ||||| ||||||| | || | || || |||| Sbjct 910 AGCAGAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTCGCTGACTATA 851 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||||||||| ||||| || Sbjct 850 ACATTCAAAAGGAGTCAAC 832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| ||||| ||||| | |||||||||||||| || | ||| ||| | Sbjct 801 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 742 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | ||||| || || || ||| ||||| || || | || || | Sbjct 741 AGACAC-GATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACC 683 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || ||||| | ||| || || || || || |||| | || | || ||||| | Sbjct 682 AGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACA 623 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 | ||||| || ||||||||| | ||| | ||| |||| || | || ||| Sbjct 622 ATATTCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 573 >seq107061 Length=185541 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| |||| ||| || ||||| || ||| Sbjct 85909 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 85850 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| |||| ||||| |||||||| ||||| || ||| | || | || ||| Sbjct 85849 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTTG 85790 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 85789 AGGCTCAGGGGAGGAA 85774 >seq73737 Length=23676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || |||||||| || || | || ||| | Sbjct 14373 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAGGTTGAGAGCTC 14314 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | ||||| || || |||||| || || || || |||| ||||| Sbjct 14313 GGACAC-GATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATC 14255 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | |||| ||| || || ||||||||||||| | ||| |||| ||||||| Sbjct 14254 AGCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATA 14195 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| || || || || || Sbjct 14194 ACATCCAGAAGGAATCCAC 14176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424516922313760