Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq110773 105 5e-18 seq67887 104 2e-17 seq73737 102 7e-17 seq35257 93.3 3e-14 seq2656 91.5 1e-13 seq91242 82.4 6e-11 >seq110773 Length=86849 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | ||||||||||||| |||||| ||||||||||| || ||||||||||| || Sbjct 41666 CCTCCCCTCAGCCTCAGTACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 41725 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| || || || ||| | || |||| ||| ||||| || Sbjct 41726 AGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 41785 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| || Sbjct 41786 ATCCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCAATAGTGTCAGAACTTTCAA 41843 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || ||||| || |||||||| || |||||||| Sbjct 41844 CCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 41892 >seq67887 Length=198949 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || |||||||| || || | |||| | || |||||||| Sbjct 190295 TGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTGC 190354 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || |||||| | || |||| ||| || ||| || | ||||| ||||| || || Sbjct 190355 TTTCCCGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTA 190414 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | | ||| || ||| |||| ||||||||||| |||| Sbjct 190415 GCT--TTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGG 190472 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||| || |||||||||||||| Sbjct 190473 TCAACGTCTTCACAAAAATCTGCAT 190497 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| |||||||| ||||| | ||| | |||| Sbjct 190970 AGCACCAAGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTTCGGCCGTCT 191029 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || || ||| | || | || ||| || || || | || || ||||| Sbjct 191030 TCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCC 191089 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | ||||| | ||| ||| | ||| || ||| Sbjct 191090 TGAATCTTCGCCTTAACGTTGTCAATTGTGTCAGAGCTTTCCACTTCAAGGGTAATTGTT 191149 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||||||||| || ||||| Sbjct 191150 TTCCCAGTTAGGGTTTTGACAAAGATTTGCAT 191181 >seq73737 Length=23676 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 |||||||| || | ||| || || |||||||| || || |||||||| |||| || | Sbjct 13083 AGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGGATATTGTAGTCCGCCAGTGTCCTA 13142 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | |||||||| ||||| || ||| | || |||| ||| |||||| || | || ||| Sbjct 13143 CCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGGAATACCTTCT 13202 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 || || || | | |||||| | | | | ||||| | ||| ||||| ||| Sbjct 13203 TTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAATGTG 13262 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||||||||| || | || || ||||| || |||||| Sbjct 13263 ATGGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCATT 13301 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||| ||||| || | || | | |||||||| ||| Sbjct 13486 TGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCAAGTGTCCTACCATCCTCCAACTGT 13545 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| |||||| || | || ||||| || || | | Sbjct 13546 TTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGGAATACCTTCTTTATCCTGTATCTTC 13605 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | ||| ||||| |||||||||||||| || Sbjct 13606 GCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAATGTGATGGTTTTTCCAGTT 13665 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | ||||| ||||| || |||||| Sbjct 13666 AAGGTTTTAACAAAGATTTGCATT 13689 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||| ||||| || | || | | |||||||| ||| Sbjct 13714 TGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCAAGTGTCCTACCATCCTCCAACTGT 13773 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| |||||| || | || ||||| || || | | Sbjct 13774 TTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGGAATACCTTCTTTATCCTGTATCTTC 13833 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | ||| ||||| |||||||||||||| || Sbjct 13834 GCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAATGTGATGGTTTTTCCAGTT 13893 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || |||||| Sbjct 13894 AAGGTCTTAACAAAGATTTGCATT 13917 >seq35257 Length=66376 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 |||||||| || | ||| || || |||||||| || || ||||| || || | || | Sbjct 583 AGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATCTGCAAGTGTCCTA 642 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | |||||||| || || || ||| | ||||||| ||| ||||| || | ||||| Sbjct 643 CCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATACCCTCC 702 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 || || ||| | | |||||| | | | | ||||| | ||| ||| | ||| Sbjct 703 TTATCCTGAATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACTTCTAATGTG 762 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||||||||| || | ||||| ||||| || |||||| Sbjct 763 ATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 801 >seq2656 Length=23473 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| || ||||| || || | ||| | ||||||| || Sbjct 20474 TGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGC 20415 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| || || || | || ||||| || ||||| Sbjct 20414 TTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTG 20355 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | |||| ||||| |||||||| ||||| ||| Sbjct 20354 GCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGTC 20295 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||||||||||| |||||||| Sbjct 20294 AAAGTTTTGACAAATATCTGCAT 20272 >seq91242 Length=50504 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | || | ||||| | || Sbjct 24907 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGAGTGCACCCATCCTCAAGCTGC 24966 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| ||||| ||| | ||| || ||||| || | | Sbjct 24967 TTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 25026 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | ||||||||| || || ||| Sbjct 25027 GCCTTAACATTGTCAATGGTGTCGGAGTTCTCAACCTCAAGGGTGATGGTCTTCCCAGTC 25086 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||||| |||||||||||||| Sbjct 25087 AATGTTTTTACAAAAATCTGCAT 25109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404300309928520