Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq75959 190 2e-43 seq88438 95.1 1e-14 seq109833 91.5 2e-13 seq72445 89.7 6e-13 seq4981 89.7 6e-13 seq133128 87.8 2e-12 seq96117 87.8 2e-12 seq13990 87.8 2e-12 seq138228 84.2 2e-11 seq108003 84.2 2e-11 seq4366 84.2 2e-11 seq136727 82.4 8e-11 seq104322 82.4 8e-11 seq101444 82.4 8e-11 >seq75959 Length=145061 Score = 190 bits (210), Expect = 2e-43 Identities = 592/901 (66%), Gaps = 28/901 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||| || || ||||||||| | || ||||||||||| ||||| |||| Sbjct 63033 CATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 63092 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| ||| | || | | | ||||||| || || || |||| ||| Sbjct 63093 TAAACTAATCAGCTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACC 63152 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 ||| | | ||| ||||||||||| || ||||| ||||| | ||||||||| | ||| Sbjct 63153 CAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATT 63212 Query 92968 CATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||||| | || || ||| || || ||||| || || || | || || | || | Sbjct 63213 CATTCCCACCAG-CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAG 63271 Query 93027 CTTCTTTCAAGATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACG--ACATAATTGT 93083 | ||| ||| | ||| ||| ||| | | || || || | ||| || | | Sbjct 63272 CATCTG-CAACAATTCCCTTAACTCGT-TCCTCAGTAAGCTTCGTCCTTAACA-AACTAT 63328 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 | | || || ||||| || || ||||||||||| | ||| |||||||| || || Sbjct 63329 AAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGA 63388 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | ||||| || || | | || || || || | ||| ||||| | | || || |||| Sbjct 63389 AGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAG 63448 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | ||||| ||||||||||| |||||||| || | ||| || ||||| || |||| Sbjct 63449 AGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGA-- 63506 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 || | |||||| || ||||| | || || |||| || ||| || | || || | Sbjct 63507 -ACCGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAA 63565 Query 93324 TAGCGTTAAATAGGTAATCTCGC-----TCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||| || |||||| || ||||| || || ||||| | || | | Sbjct 63566 CTGCGCGGAA----TAATCT-GCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAG 63620 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 |||| ||||| || ||||||| || || || || |||||||| ||||||||| | Sbjct 63621 CAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACG 63680 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || |||| | || ||||||| || || | | || ||||| || || || Sbjct 63681 CGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 63740 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || || || || ||||| || | | ||| | || ||||| | || | | || Sbjct 63741 GTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAG 63800 Query 93559 CTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | ||||| | ||| | |||| || | ||||||||| || ||||||| || || Sbjct 63801 GGTTTCCCAGTGACGGGT--ATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAG 63858 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 ||| |||||||||||||| ||||| || | | | ||||||||||| || || ||| || Sbjct 63859 GCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACAT-ACAGAA 63917 Query 93677 C 93677 | Sbjct 63918 C 63918 >seq88438 Length=14988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 14378 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 14435 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||||||| |||| | ||||| Sbjct 14436 GCGTGGGTTCAAATCCCACTTCTGACAAATT-GTATTTTAGTTTTT 14480 >seq109833 Length=31181 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 11633 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAG 11576 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 11575 GGCGTGGGTTCAAATCCCACTTCTGACAATTT 11544 >seq72445 Length=77883 Score = 89.7 bits (98), Expect = 6e-13 Identities = 92/118 (78%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 126253 GCTT-CTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTT 126311 |||| |||| | || ||| |||||||||||||||||||||||||||||| | |||||| Sbjct 17495 GCTTACTATATCAAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT- 17553 Query 126312 CCCTCGGGAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 || | |||||||||| || |||||| ||| ||| || || ||| || ||| || Sbjct 17554 -CCGAAAGGGCGTGGGTTCAAATCCCACAGCTGTCAATTTCTTTGTGGTATATTTTTT 17610 >seq4981 Length=142891 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 85919 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 85976 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 85977 GCGTGGGTTCAAATCCCACTTCTGACAATTT 86007 >seq133128 Length=77724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 12306 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 12363 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 12364 GCGTGGGTTCAAATCCCACTTCTGACAA 12391 >seq96117 Length=48669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 7390 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 7447 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| |||||||||| Sbjct 7448 CGTGGGTTCAAATCCCACTTCTGACAAATT 7477 >seq13990 Length=106991 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 67131 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 67074 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 67073 GCGTGGGTTCAAATCCCACTTCTGACAA 67046 >seq138228 Length=93090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| || | ||| Sbjct 42396 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTACGAGGGCG 42455 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||| || ||||| ||||||| Sbjct 42456 TGGGTTCAAATCCCACTTCTGACAA 42480 >seq108003 Length=39014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 13365 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 13422 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 13423 CGTGGGTTCAAATCCCACTTCTGACA 13448 >seq4366 Length=10142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 5160 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 5217 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 5218 GCGTGGGTTCAAATCCCACTTCTGACAA 5245 >seq136727 Length=163604 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 101222 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 101279 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 101280 TTCAAATCCCACAGCTGTCAAGTTTTT 101306 >seq104322 Length=44026 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 21776 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 21719 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 21718 GCGTGGGTTCAAATCCCACTTCTGACA 21692 >seq101444 Length=92487 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3232 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3289 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 3290 TTCAAATCCCACAGCTGTCAAA 3311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555750224663520