Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq68600 107 2e-18 seq73737 96.9 3e-15 seq67887 95.1 1e-14 seq35257 87.8 2e-12 seq68234 82.4 6e-11 >seq68600 Length=37585 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGG--AACCCA 111244 |||||||| ||||| || || | || || || |||||||| | || || ||| | Sbjct 35304 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGA---GGTTAACTC- 35249 Query 111245 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 ||| || ||| | | || ||| ||||||| ||||| ||||| |||| |||| Sbjct 35248 -CGACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATC 35190 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTA 111362 |||||||| | |||| ||| || |||||| | |||||| || || ||| || ||||| Sbjct 35189 AACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAATACTT--GCTGATTA 35132 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || || || || || || ||| | ||||||||||| ||||| || Sbjct 35131 CAATATTCAGAAGGACTCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 35081 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322 ||||||||| | || ||||| ||||| |||| | |||||||||||| | |||| || Sbjct 32505 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCTAGATCAACAAAGGTTGATTTTTG 32447 Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382 | || |||||| | | ||| | ||| | || ||||||| || || || ||||| | Sbjct 32446 CTGGAAAACAACTCGGGGATGGTCGAACACTTGCTGATTATAGCATTCAGAAGGAATCCA 32387 Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||| | ||||| ||||| ||||| || Sbjct 32386 CACTCCATCTTGTGTTACGTCTTCGCGGAGG 32356 >seq73737 Length=23676 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| || || ||||| | ||||| ||||| || || ||||| || | Sbjct 14601 AATGCAAATCTTCGTTAAAACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 14542 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | || || |||||| || || ||||| |||| || || Sbjct 14541 GGACACTATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 14482 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||| | |||| |||||| || |||||||||||| ||| |||| |||||||| Sbjct 14481 ACAAAGGTTGATTTTTGCGGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 14422 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || || ||||| || |||| | || || || ||||| Sbjct 14421 TATTCAAAAGGAGTCAACACTTCACCTAGTCCTCCGCCTTCGTGGTGG 14374 >seq67887 Length=198949 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || ||| ||||||| |||||||| || |||| |||| Sbjct 190497 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 190438 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| || ||| ||||| || || ||||| ||||| Sbjct 190437 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 190378 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | |||||| || |||||||||||| ||| | || ||||| || Sbjct 190377 CAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAAC 190318 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || | || | ||||| || ||||| Sbjct 190317 ATTCAGAAGGAGTCCACCCTGCACCTTGTCCTACGTCTCCGTGGTGG 190271 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| | || || ||||| |||||| | ||| |||| | Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || ||| ||||| ||||| | || ||||| Sbjct 191121 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 191062 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| || || || |||||||| |||| | |||||||| || Sbjct 191061 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTACAAC 191002 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || || ||| | ||||| ||||| || Sbjct 191001 ATTCAAAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTTCGCGGCGG 190955 >seq35257 Length=66376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || | ||||| ||||| || || ||||| || | Sbjct 1029 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 970 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | | || || ||||||| ||||| |||||| | || ||||| Sbjct 969 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 910 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || || |||||||||||| | ||| | || || ||||| Sbjct 909 GCAGAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTCGCTGACTATAA 850 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || ||||| || |||| | || || || ||||| Sbjct 849 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGG 802 >seq68234 Length=173017 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| | || || || || ||||| |||| ||| || ||||| |||||| Sbjct 57487 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 57428 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 ||| | |||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 57427 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 57378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422217402421600