Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq35257 122 6e-23 seq2656 122 6e-23 seq73737 104 2e-17 seq68600 102 6e-17 seq67887 95.1 9e-15 seq11802 95.1 9e-15 seq51332 87.8 1e-12 seq68234 82.4 5e-11 >seq35257 Length=66376 Score = 122 bits (134), Expect = 6e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| |||||||| |||||||| || | ||| || | | Sbjct 801 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 742 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || ||| ||||| |||||| | || | |||| Sbjct 741 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 682 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| |||||||||||||| || || | || ||| | || | || |||||||| Sbjct 681 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 622 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 |||||||||||| |||||||| ||| Sbjct 621 TATTCAGAAGGAGTCTACTCTCCAT 597 Score = 114 bits (126), Expect = 9e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| ||||| || ||||||||||| ||||| || | || Sbjct 1484 ATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATTACATTGGAAGTTGAGAGCTCA 1425 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||| ||||| || ||| | || | |||| Sbjct 1424 GACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCAG 1365 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || || ||||| || ||| |||||||| || ||| |||| ||||| || Sbjct 1364 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAAC 1305 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||||||||| ||||| Sbjct 1304 ATCCAGAAGGAATCTACCCTTCA 1282 >seq2656 Length=23473 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| ||||||||||| || || ||| | ||| || | || Sbjct 19816 ATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTCA 19875 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || || || |||||| | ||| | |||| Sbjct 19876 GATACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAG 19935 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| |||||||| || ||| || || | || ||||||||| Sbjct 19936 CAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGATTACAAT 19995 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || |||||| |||| | ||| | | ||||| Sbjct 19996 ATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 20042 >seq73737 Length=23676 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| || |||||||| || ||||| || | | Sbjct 13301 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13242 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || || |||||||| ||| | || |||| Sbjct 13241 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 13182 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| | || ||| | || |||| || ||||| Sbjct 13181 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACAA 13122 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||| |||||||| |||||||| ||| Sbjct 13121 TATCCAGAAGGAGTCTACTCTCCAT 13097 Score = 104 bits (114), Expect = 2e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| || ||||| || || |||| || | | Sbjct 14373 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAGGTTGAGAGCTC 14314 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || ||| | | | || ||||| |||||| || || |||||| | ||||| | Sbjct 14313 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCTG---A 14257 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || ||||| | || |||||||| || ||| |||||||| || |||| |||| ||||| Sbjct 14256 TCAGCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTA 14197 Query 22010 CAATATTCAGAAGGAATCTACTCTTCA 22036 || || ||||||||||| || ||||| Sbjct 14196 TAACATCCAGAAGGAATCCACCCTTCA 14170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | || | |||| |||||||| || ||||| || |||||| | ||| Sbjct 14051 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 13992 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| || ||| | || ||||| |||||||| ||||||||||| ||||| Sbjct 13991 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCTACCCTTCA 13942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| ||||| || |||||||| || ||||| || | | Sbjct 13689 AATGCAAATCTTTGTTAAAACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13630 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | || | ||| || || |||||||| ||| | || |||| Sbjct 13629 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 13570 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| | || ||| | || | || || || || Sbjct 13569 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATAA 13510 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||||| ||||| || || || || Sbjct 13509 CATTCAAAAGGAGTCAACACTCCA 13486 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||||| || ||||| || |||||| | |||||| || ||| | || |||| Sbjct 13413 ACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATT 13354 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 | |||||||| ||||||||||| ||||| Sbjct 13353 ATAATATTCAAAAGGAATCTACCCTTCA 13326 >seq68600 Length=37585 Score = 102 bits (112), Expect = 6e-17 Identities = 164/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| ||| |||| || || |||||||| | || || | | Sbjct 35304 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGA---GGTTAACTCC 35248 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||||||| || || || || | ||| | | ||| Sbjct 35247 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 35188 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 || || | || |||||||| |||||||| |||||| | || ||| || ||||||| Sbjct 35187 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAATACTT--GCTGATTACA 35130 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 ||||||||||||| || ||||| ||| | || || ||| | || ||||| ||| Sbjct 35129 ATATTCAGAAGGACTCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGTTAT 35077 >seq67887 Length=198949 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||||||| | || || || || || ||| | ||| ||| | || Sbjct 190725 ATGCAGATCTTCGTTAAAACACTCACTGGGAAGACTATCACCCTCGAAGTCGAAAGCTCA 190666 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || |||||| | || | |||| Sbjct 190665 GATACTATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 190606 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || | |||||| | |||| | || ||||| ||| Sbjct 190605 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGGAGAACTTTAGCTGATTATAAT 190546 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| |||| | ||| | || || || Sbjct 190545 ATCCAGAAGGAATCCACACTTCACTTGGTGCTCCGTCTTCGTGGTGG 190499 >seq11802 Length=78489 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| || || || ||||| ||||| | ||| || | | Sbjct 56753 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTCGAGAGCTCG 56694 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| ||| ||| ||||| || || | ||||| || Sbjct 56693 GACACCATCGACAATGTAAAGGCAAAGATTCAAGATAAGGAAGGGATTCCACCTG---AC 56637 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||| |||||||| || || || |||||| || || | || |||||| Sbjct 56636 CAGCAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACACTAGCTGATTAC 56577 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||| ||||||||||| || || ||| |||| Sbjct 56576 AATATCCAGAAGGAATCCACCCTCCATCTGGT 56545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || |||||||| || |||||||||||| | || || | | Sbjct 56525 ATGCAAATCTTTGTGAAGACATTAACAGGGAAAACCATTACCCTTGAGGTTGAGAGCTCG 56466 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| |||||| ||||| || || | ||||| || Sbjct 56465 GACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCTG---AC 56409 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| | || |||||||| ||||| || || ||| || ||| | || ||||| Sbjct 56408 CAGCAGAGGTTGATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTTTAGCTGATTAT 56349 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || ||||||||||| || || ||| |||| Sbjct 56348 AACATCCAGAAGGAATCAACCCTCCATTTGGT 56317 >seq51332 Length=333 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 21864 AAAACCATTACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATT 21923 ||||||||||| ||||| || | |||| || | | || ||||| ||||| Sbjct 1 AAAACCATTACATTGGAAGTTGAGAGCTCAGACACAATTGATAATGTTAAGGCGAAAATC 60 Query 21924 GCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTA 21983 ||||| || ||| | || | |||| ||||| || || || ||||| || ||| || Sbjct 61 CAAGATAAGGAAGGTATCCCGCCAGACCAGCAGAGGCTGATTTTCGCTGGGAAGCAATTA 120 Query 21984 GAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 |||||| || ||| |||| ||||| || || |||||||||||||| ||||| Sbjct 121 GAAGATGGAAGAACGCTGGCTGATTATAACATCCAGAAGGAATCTACCCTTCA 173 >seq68234 Length=173017 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| || ||||| |||| ||||| || || |||||||| ||||| | ||| Sbjct 57487 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 57428 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| |||| |||| ||||||||||| ||||| ||||| || ||||| |||| || Sbjct 57427 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTG 57368 Query 22047 CGTTTACGAGGAGGA 22061 | | |||||||| Sbjct 57367 AGGCTCAGAGGAGGA 57353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357428429459992