Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq75959 134 3e-26 >seq75959 Length=145061 Score = 134 bits (148), Expect = 3e-26 Identities = 297/437 (68%), Gaps = 15/437 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| |||||||| || || ||||| ||| ||||||||| Sbjct 63764 CTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTCATG 63705 Query 42483 AAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTT-CTACGGCTTCCAGATAGCCATAGAG 42539 ||||| || || | || |||||||| ||||| |||||||||||| || || || || Sbjct 63704 AAAGAAGTCCA--AGTTGCGGAGGCGCG-TGCTTTCTACGGCTTCCAAATCGCGATTGAA 63648 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAACA--CGTACATCCTGGATCCCGTC 42596 ||| | || || ||| |||| || |||| || | | | |||||| ||| | | | Sbjct 63647 AACATCCATTCCGAGATGTA---CAGTCTGCTTCTAGAGTCTTACATCAAGGACTCTGAC 63591 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 || | | | | ||| || | ||||| || ||||| | ||||||||||| | Sbjct 63590 GAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAG 63531 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| || |||||||| || |||| ||| || | ||| | |||| || ||| Sbjct 63530 TGGGCACTACGTTGGATCGACGGTTCCGA---AACATTTGCGGAGCGTTTGGTTGCATTT 63474 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | || || || || || ||||| || |||| | || |||||| | || || Sbjct 63473 GCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGGTTAAAAAAG 63414 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || ||||| ||| | |||||||||||||| | || |||||||| || || Sbjct 63413 CGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAGTTGATTTCAAGGGACGAAGGTTTG 63354 Query 42837 CATAGGGACTTTGCCTG 42853 || | || ||||| || Sbjct 63353 CACTGTGATTTTGCTTG 63337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942455857116480