Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq151228 91.5 1e-13 seq68163 84.2 2e-11 >seq151228 Length=243336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||||||||||||| | ||| | || || | | ||| || |||||||| || || Sbjct 172677 ACCAGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCGATGTTAAATGGCAC 172736 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 |||||||||||| ||| | || | |||||||| |||||||| | ||| || | || || Sbjct 172737 TCCCAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAAC 172796 Query 20359 ATAAAATTGACATAACAAG 20377 |||||| || || |||||| Sbjct 172797 ATAAAACTG-CA-AACAAG 172813 >seq68163 Length=100544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||| ||||||||| | ||| | || | | | ||| ||||||||||| || || Sbjct 39755 ACCAGAAACATGAGCTATCATGCATGTCAGCAACGCATAAGATGCAATGTTAAATGGCAC 39696 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| |||||| || | || | |||||||| ||||||||| | ||| |||| ||||| Sbjct 39695 TCCCAGACCCATATCAGCAGATCGCTGATACATCTGACAGGATAACTCCCCGTTGGCTAC 39636 Query 20359 ATAAAATTG 20367 ||| || || Sbjct 39635 ATAGAACTG 39627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440492548156320