Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq55461 104 2e-17 seq102184 100 2e-16 seq67887 95.1 1e-14 seq35257 93.3 3e-14 seq2656 87.8 1e-12 seq110773 86.0 5e-12 >seq55461 Length=388 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 165 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 224 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 225 ATAACTGATATAATGAGCCTTTTGCGGTTTC 255 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 165 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 224 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 225 ATAACTGATATAATGAGCCTTTTGCGGTTTC 255 >seq102184 Length=23720 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || || || ||||| || || ||| ||||||||||||||||||||| Sbjct 1916 CCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGCC 1975 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| | | |||| || | |||||| |||||||| ||||| | |||||| ||| || Sbjct 1976 AATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGGA 2035 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || |||| | | | | ||||||| || | || | | |||| | | ||| Sbjct 2036 ATACCTTCCTTGT-CTTGAATCTTTGCTTTTACATTG---TCGATAGTATCTGAACTTTC 2091 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || || ||||| ||||| || |||||||| ||||| Sbjct 2092 AACTTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 2142 >seq67887 Length=198949 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || || || ||| ||||||||||||||||||||| Sbjct 190267 GAAACCACCACGGAGACGTAGGACAAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATC 190326 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 || | ||| | || ||||||||||| || ||||| ||||| | |||||||||| Sbjct 190327 AGCGAGGGTTCGTCCATCTTCCAATTGCTTTCCCGCAAAGATCAGCCTCTGCTGATCCGG 190386 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTCACACTATCAGTAGA 34073 || | | ||| |||||| ||| || || | | || | | | |||||| | Sbjct 190387 GGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCA---ATAGTATCAGAACT 190443 Query 34074 TTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || | || || ||||| ||||| | || |||||||| || ||||| Sbjct 190444 TTCCACCTCCAAAGTGATGGTTTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 190497 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || |||| ||||| || ||||||||| ||||||||||| || | ||| Sbjct 190736 AGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCGAGGGTTCGG 190795 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||| |||||||| ||||| | ||||| || || | | |||| Sbjct 190796 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATTCCCTCT 190855 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 || ||| ||||| ||||| | | | | | || | ||| ||| | || Sbjct 190856 TTATCCTGGATTTTCGCCTTAACGTTATCAATAGTGTCGGAGCTTTCAACTTCAAGGGTG 190915 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||| |||||||| ||||| || ||||||||||| Sbjct 190916 ATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 190953 >seq35257 Length=66376 Score = 93.3 bits (102), Expect = 3e-14 Identities = 168/238 (71%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || ||||||| |||||| ||||| || || |||||||||||| |||||||| Sbjct 570 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATC 629 Query 33957 TGCCAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || ||| |||| || | || ||||| ||||| || ||||| || || | |||||| || Sbjct 630 TG-CAAGTGTC-CTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCT 687 Query 34015 ACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTA 34071 || | | ||| || ||| ||| || ||| | || | || | || | | Sbjct 688 GGTGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATC---GTGTCTG-A 743 Query 34072 GAT-TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | | || ||| | || || |||||||| |||| ||||| ||||||||||||||| Sbjct 744 GCTCTCAACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 801 >seq2656 Length=23473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||| |||||||||||| || ||||||||| ||||| ||||| | Sbjct 20271 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAG- 20213 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| |||| | | || || | |||||| || |||||||||| |||||||| || Sbjct 20212 CAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTC 20158 >seq110773 Length=86849 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||| |||| ||| || ||| |||||||||||||||||| || | | Sbjct 41666 CCTCCCCTCAGCCTCAGTACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG-C 41724 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || ||||| ||||| || ||||| ||||| | |||||| || Sbjct 41725 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTC 41778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396290315637496