Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq25445 84.2 3e-11 seq92713 82.4 9e-11 >seq25445 Length=22738 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/367 (66%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 3611 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 3552 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 | || | || || || | || || || ||||| || ||||| ||||| || | Sbjct 3551 AACAACTATTATACCAGTATTTCCTTCGAAACCGTCCATTTCTGTCAATAGTTGGTTCAG 3492 Query 10909 GGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 10966 ||| ||||| | |||||||||| | | | | | || | | | |||| || || Sbjct 3491 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 3434 Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTT-CACGGGCAACTTCAAAGAT 11025 || ||||||||||| | || || || || || ||||| | || | ||| ||| | Sbjct 3433 GCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 3375 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 ||| ||||||| ||| || ||||| |||||||| || ||||| | | | ||| | Sbjct 3374 ATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 3316 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 ||| || || || || | |||||| || || || || || ||||||||||| | Sbjct 3315 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAG 3256 Query 11145 TCCCAGG 11151 | ||||| Sbjct 3255 TACCAGG 3249 >seq92713 Length=27850 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/163 (72%), Gaps = 10/163 (6%) Strand=Plus/Plus Query 30460 CACTTTGCCGCACAAAGTCATGTGGACAACTCATTTATAAGTCCACTTGGTTTCACATTA 30519 || ||||| ||||| | ||||||||| || |||||| || | || ||| |||||| | Sbjct 17551 CATTTTGCAGCACAGACTCATGTGGATAATTCATTTGGAAATTCATTTGAGTTCACAATC 17610 Query 30520 GATAATACGTATGGAACACACGCACTTGTTGAAATGTGTAGAAGGCATACACCAAATGTA 30579 |||| | ||||| ||||| | |||| ||||| |||| || | || |||| || Sbjct 17611 AATAACATTTATGGTACACATGTACTTCTTGAAGCTTGTA--AG---TTGACTAAATCTA 17665 Query 30580 ----GAG-TTCATACATTTTAGTACAGATGAAGTATACGGCGA 30617 ||| ||||| ||| |||||||||||||||| || || || Sbjct 17666 TCAAGAGATTCATTCATGTTAGTACAGATGAAGTTTATGGTGA 17708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596162267847840