Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq102184 116 4e-21 seq73737 111 2e-19 seq91242 104 2e-17 seq11802 98.7 1e-15 seq2656 84.2 2e-11 seq62100 82.4 8e-11 >seq102184 Length=23720 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||||||||| || ||||| | | |||||||| || ||||| ||||| Sbjct 1688 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGCA 1747 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| ||||||||||| | | |||| | |||||| ||||| || || Sbjct 1748 AGAGTCCTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCGGG 1807 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| | Sbjct 1808 ATACCCTCCTTGTC-TTGAATCTTTGCTTTGACATTG-TCAATGGTATCAGAACTCTCAA 1865 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| ||| || ||||||||||||||| Sbjct 1866 CCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCATG 1915 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | ||| | ||| | | ||||||| || ||||||||||| || Sbjct 1915 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 1974 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | | |||||| ||||| || |||| | |||| || | ||| ||||||||||| Sbjct 1975 CAATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGG 2034 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTA-ATTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||| ||||| ||| | |||| ||||| |||| || | || || | || Sbjct 2035 AATACCTTCCTTGTC-TTGAATCTTTGCTTTTACATTG-TCGATAGTATCTGAACTTTCA 2092 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || || || || || || ||||| |||||||| Sbjct 2093 ACTTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 2142 >seq73737 Length=23676 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||| || | ||||||| |||||||| ||||| || | | Sbjct 14635 GACTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTGCA 14694 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | ||| ||||| || || || |||||||||||||| |||||| ||| | | Sbjct 14695 AAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTAACA 14754 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||| || |||| || | || || |||||||| || || Sbjct 14755 TTG-TCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGTCTT 14813 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 14814 CACAAAGATCTGCAT 14828 >seq91242 Length=50504 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | || | | | |||||||| ||||||||||||||| Sbjct 24882 GCCACCACGCAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 24941 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | | ||||| || || || || | | |||| | | ||| ||||| ||||| Sbjct 24942 AAGAGTGCACCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 25001 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| || || | |||| || | |||||||| ||| | Sbjct 25002 GATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTG-TCAATGGTGTCGGAGTTCTCAA 25060 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| |||||||||||||||||||| Sbjct 25061 CCTCAAGGGTGATGGTCTTCCCAGTCAATGTTTTTACAAAAATCTGCAT 25109 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||||||| | ||| ||| ||||| || || || || | | Sbjct 24688 GACTCCTTTTGAATATTGTAGTCGGCAAGAGTTCGCCCATCCTCAAGCTGCTTTCCAGCA 24747 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| || || ||||| || ||||| ||||| || | || | ||||| Sbjct 24748 AAGATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTC-CTGTATCTTCGCCTTAAT 24806 Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| ||||| | || | || || ||||||| |||||| Sbjct 24807 ATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTCAAAGTTTT 24866 Query 138600 TACAAAAATCTGCATG 138615 ||||||||||||||| Sbjct 24867 CACAAAAATCTGCATG 24882 >seq11802 Length=78489 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || ||||| | ||| | || | | | ||||||||||| ||||||||||| Sbjct 56983 CCACCACGTAAACGGAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 57042 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| || || | | |||| | | || || |||||||| Sbjct 57043 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGA 57102 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| |||| | || | ||||| | ||| || Sbjct 57103 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAAC 57161 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||| | |||||||||||| |||||||| Sbjct 57162 CTCGAGAGTGATAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 57209 >seq2656 Length=23473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | || ||||| | | |||| ||||| ||||| ||||| || Sbjct 20043 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 19984 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | ||||| |||||||| || | | | || | | ||| ||||| ||||| Sbjct 19983 AAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 19924 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| ||| |||| ||||| | | ||| || | ||| | Sbjct 19923 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGT-CGATGGTATCTGAGCTCTCAA 19865 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||| || || || | |||||| ||||||||||||||| Sbjct 19864 CTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 19815 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||| ||||| || | ||| || || || || || || || | Sbjct 19555 TTGACTCCTTTTGAATATTGTAATCAGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAG 19496 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||| || | ||| ||||| || || || ||||| ||||| ||| |||| | || Sbjct 19495 CAAAGATCAGCCTCTGCTGGTCTGGGGGAATCCCTTCCTTGTC-TTGAATTTTGGCCTTC 19437 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | ||||| | ||| ||||||| || | ||||| ||||| || || Sbjct 19436 ACGTTATCAATTGTGTCTGAACTCTCAACCTCGAGAGTAATGGTTTTTCCAGTGAGTGTC 19377 Query 138598 TTTACAAAAATCTGCAT 138614 |||||||| |||||||| Sbjct 19376 TTTACAAAGATCTGCAT 19360 >seq62100 Length=87079 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || ||||| || || ||||| | Sbjct 33764 GACTCCTTCTGGATGTTGTAGTCAGCT-AGTGTTCGGCCATCCTCAAGCTGCTTACCTGC 33822 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | ||||| |||||||| || || ||||| ||||| ||| | || | ||| Sbjct 33823 GAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTC-CTGAATCTTAGCCTTAA 33881 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || || ||||| || Sbjct 33882 CATTG-TCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCCGTCAGGGTC 33940 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 33941 TTCACGAATATCTGCAT 33957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495272679082560