Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq67887 109 4e-19 seq73737 105 5e-18 seq72910 98.7 7e-16 seq35257 91.5 1e-13 seq60369 86.0 4e-12 seq11802 86.0 4e-12 seq2656 82.4 5e-11 >seq67887 Length=198949 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || ||||| || | |||| || ||||| || || |||||||| Sbjct 190955 CCGCCGCGAAGACGGAGCACCAAGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCG 191014 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || | || ||||| || || ||| |||| || || | ||||||||| | || Sbjct 191015 AGAGTTCGGCCGTCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGTGGG 191074 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || |||| ||| | | | |||||| | ||||||||| Sbjct 191075 ATTCCTTCCTTGTCCTGAATCTTCGCCTTAA-CGTTGTCAATTGTGTCAGAGCTTTCCAC 191133 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||||||||| || |||| ||||| || ||||| |||||| Sbjct 191134 TTCAAGGGTAATTGTTTTCCCAGTTAGGGTTTTGACAAAGATTTGCATG 191182 >seq73737 Length=23676 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| ||||| Sbjct 14410 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCCGCAAAA 14469 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | || || |||| || | ||||| || || ||||| |||| | Sbjct 14470 ATCAACCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACATTA 14529 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| || |||||||| || ||||| ||||| ||| Sbjct 14530 TCAATAGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAAGGTTTTAACG 14589 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 14590 AAGATTTGCAT 14600 >seq72910 Length=47125 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||| ||| || || || || ||||| || Sbjct 43071 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 43130 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| |||| ||||| ||| | ||||| | |||||||| |||| || Sbjct 43131 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 43190 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||| || | ||| | | | |||||| | | ||| || Sbjct 43191 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGAC 43249 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || |||||||||| ||||| |||||||||||||| Sbjct 43250 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 43297 >seq35257 Length=66376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGC 39583 ||| || || || |||||||| |||| |||||| ||| || ||||| ||||| Sbjct 1293 TTCCTTCTGGATGTTATAATCAGCCA----GCGTTCTTCCATCTTCTAATTGCTTCCCAG 1348 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 | ||||| | | |||||| || | || | ||||| || || ||||| |||| Sbjct 1349 CGAAAATCAGCCTCTGCTGGTCTGGCGGGATACCTTCCTTATCTTGGATTTTCGCCTTAA 1408 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 | | | |||||||| ||| || || ||||| ||||| ||||| || ||||| |||| Sbjct 1409 CATTATCAATTGTGTCTGAGCTCTCAACTTCCAATGTAATGGTTTTTCCAGTTAAGGTTT 1468 Query 39704 TTACGAAGATCTGCAT 39719 | || ||||||||||| Sbjct 1469 TAACAAAGATCTGCAT 1484 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || ||||| || || | | | |||| |||||||| || || |||| Sbjct 838 TCCTTTTGAATGTTATAGTCAGCGAGAGTCCTCCCATCTTCCAATTGCTTTCCTGCAAAT 897 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | |||||| ||||| |||||| |||| | Sbjct 898 ATCAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGAATTTTTGCCTTAACATTG 957 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| || |||||||| || ||||| || || || Sbjct 958 TCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAAGGTCTTAACA 1017 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 1018 AAGATTTGCAT 1028 >seq60369 Length=529 Score = 86.0 bits (94), Expect = 4e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| || | | || |||| |||||||| ||||| |||| Sbjct 171 TCCTTTTGAATATTATAATCTGCGAGAGTACGCCCATCTTCCAATTGCTTCCCTGCAAAT 112 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | || |||||||| |||||| |||| | Sbjct 111 ATCAGCCTCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGTATTTTCGCCTTAACATTG 52 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAA 39698 | | ||||| | ||| || || ||||| || |||||||| || ||||| Sbjct 51 TCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAA 2 >seq11802 Length=78489 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || | ||| || || |||| || || | |||||||||| || | |||||| | Sbjct 57053 CATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCT 57112 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| || ||| |||| | | | |||||||| ||| || || || | ||| | Sbjct 57113 TGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACCTCGAGAGTGA 57172 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || |||||||||||||| ||||||||||| Sbjct 57173 TAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 57209 >seq2656 Length=23473 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || ||| || |||||||| | || ||| || || ||||| ||||| || Sbjct 20043 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 19984 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| || | ||||||||| |||| || || | |||||| || | || Sbjct 19983 AAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 19924 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| || ||| |||| || |||| | || |||| ||| || Sbjct 19923 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATG--GTATCTGAGCTCTCA 19866 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || |||||||||||||| || || ||||||||| Sbjct 19865 ACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 19815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346694142852284