Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq25445 132 6e-26 seq74458 116 4e-21 seq43445 113 5e-20 seq70622 109 6e-19 seq113574 102 1e-16 seq75959 93.3 5e-14 >seq25445 Length=22738 Score = 132 bits (146), Expect = 6e-26 Identities = 254/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 3611 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 3552 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||| ||||| |||||||| |||||||| Sbjct 3551 AACAACTATTATACCAGTATTTCCTT--CGAAACCGTCCATTTCTGTCAATAGTTGGTTC 3494 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 3493 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 3436 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 3435 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAAA 3376 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 3375 GATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA- 3317 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 3316 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCA 3257 Query 9549 GTACCTGG 9556 ||||| || Sbjct 3256 GTACCAGG 3249 >seq74458 Length=76282 Score = 116 bits (128), Expect = 4e-21 Identities = 196/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 19153 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 19096 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || |||| | ||| | ||||| ||||||||||||||||| || ||||| Sbjct 19095 CCTCCCATTCCTGCACCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 19036 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | || || || || ||||| Sbjct 19035 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 18977 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||||| ||| ||||| | || || | |||| || || || ||| || |||||| Sbjct 18976 AACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTCACC 18917 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| |||| || | ||| ||||| || ||||| || Sbjct 18916 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 18878 >seq43445 Length=222620 Score = 113 bits (124), Expect = 5e-20 Identities = 197/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| |||||||| ||||| |||||||| || |||| |||||||| | Sbjct 212305 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 212361 Query 9341 CATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 212362 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 212418 Query 9395 AATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 |||||| || | ||| | || | ||||| | ||| | || || || |||| Sbjct 212419 AATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 212477 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 |||| ||||||| ||| ||||| | || || | |||| || || || ||| | | Sbjct 212478 CACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 212537 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || | |||| || | ||| |||||||| || || || Sbjct 212538 CACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTGCCAGG 212580 >seq70622 Length=39777 Score = 109 bits (120), Expect = 6e-19 Identities = 198/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 2939 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 2880 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 ||||||| | || |||||| | ||||||||||| || || | |||||| ||| Sbjct 2879 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCAGTGAGAAGTTGATTA 2822 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 | || || || | ||||||||| | | | || ||||| | | |||| | || | Sbjct 2821 AGTGTCTGCTCTCTTTCATCATTTCCACCGCCAAT--ACCAGTTCCTCTTTGCCTCCCAA 2764 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | ||||||||||||||||| ||||| | ||| ||| |||||| || | | || | Sbjct 2763 CAGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTCCTTTGCCTTGTTGAATA 2704 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | ||| || || |||||||||||||||||||| ||||| Sbjct 2703 AGTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACAAA 2658 >seq113574 Length=79877 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || |||||||| || |||||||| || | ||||| | ||| ||| ||||| | ||| Sbjct 17467 TGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 17526 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||||| | |||||| ||||| || ||| |||||| || | | Sbjct 17527 GACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGAT 17586 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| ||| || |||| | | | || | || | || | || || Sbjct 17587 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 17645 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | ||||||||||||||| |||||||||| || ||||| |||| Sbjct 17646 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 17690 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | |||||| ||||| || ||| | |||| Sbjct 16110 ACATATCTTGGCAGAGCAATTGAAGCAAGATTGCATACAGCAGTTTCAGTTGGACTTGTG 16169 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | ||| || ||||||||||| || ||| || || || | ||||| |||||| Sbjct 16170 TATTCAATAATCTCAGTACACAAGTTAGACGACTTGATAGTGCCAAGATTCTGCTGGTTA 16229 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||||| ||||| Sbjct 16230 CTTTTTCTATTGCACGTATCCT 16251 >seq75959 Length=145061 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/276 (68%), Gaps = 11/276 (4%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || || | ||||| | || || |||||| || || Sbjct 63340 GCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCA 63399 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | |||||||| || ||||| | ||||| ||||| || ||||| || ||| Sbjct 63400 GGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATA 63459 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG-CGAGACTTTGTGTCAAA 117452 || |||||||| ||||| |||| | ||||| || || | || || ||| | Sbjct 63460 CCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACC----GTCGAT 63515 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| | |||||| |||||||||||||||| ||| || | ||| | | || || Sbjct 63516 CCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAA 63575 Query 117513 TAA-CTGCTTCTTT--TCAGATCCATCCTTAATGTA 117545 ||| |||||| ||| ||||| ||||| ||||| Sbjct 63576 TAATCTGCTTTTTTCGTCAGA---GTCCTTGATGTA 63608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588804171791520