Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq75959 152 6e-32 seq113574 100 3e-16 >seq75959 Length=145061 Score = 152 bits (168), Expect = 6e-32 Identities = 560/872 (64%), Gaps = 5/872 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 63045 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 63104 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||| ||||| | |||| || | || | | || || | | Sbjct 63105 CTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAA 63164 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||| || || |||| ||| ||| || |||||| ||| | ||||||||| | | Sbjct 63165 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 63224 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || || || | ||| || |||||| | || || |||| | ||| Sbjct 63225 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 63284 Query 18909 AGATACAACTCTATCTTCATTAGGAGG-GTATAGAAGATGTTTAAACATCAAACATGCAA 18967 ||||| || ||| || | || || | | || | |||||| |||| Sbjct 63285 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCAA 63343 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||||| || | || ||||| || ||||| || || || || ||||| ||||||| Sbjct 63344 AATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGGCA 63403 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | | || | ||||||||||||||||||| | || |||||| || || ||||||| Sbjct 63404 TTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTT 63463 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || ||||| ||||| | | |||| || | | || | | ||||| Sbjct 63464 CCACACAAGCAAATGCAACCAAAC--GCTCCGCAAAT-GTTTCGGAACCGTCGATCCAAC 63520 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 |||||||| | |||||||| | ||||| || || ||||| | | |||| Sbjct 63521 GTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATC 63580 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | || || | || || | || | |||| | | ||||||||| || |||| Sbjct 63581 TGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGGAAT 63640 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || || || || || ||||| ||| | || || | | || |||| Sbjct 63641 GGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGACTT 63700 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | || ||| || | | ||||| ||| || || || || || ||||| | Sbjct 63701 CTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGG 63760 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | | ||||| | || ||||| |||| | | ||||| || | ||| | | ||| Sbjct 63761 CAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGGTAT 63820 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 || ||||||||| ||||| ||| | ||||| ||||| || |||||||| ||||| | Sbjct 63821 CTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTT 63880 Query 19508 TCCATATATCACGATATTGTATAGGAAATATA 19539 ||| || | | ||||| || || || ||| Sbjct 63881 CCCAAATTTGTGGGTATTGAATTGGGAACATA 63912 >seq113574 Length=79877 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | ||||||||||||||||||||||||| | |||||| | || | ||| | Sbjct 17478 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17537 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | || ||||| || ||||| | ||| || || || | |||||| | ||| | Sbjct 17538 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 17596 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||| || ||||| |||| ||| | || || || || || || | || | Sbjct 17597 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 17656 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| |||||||| || | || |||||| | |||| Sbjct 17657 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCAT 17698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560987758314720