Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq75959 125 8e-24 >seq75959 Length=145061 Score = 125 bits (138), Expect = 8e-24 Identities = 366/561 (65%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| || |||||||| || || ||||| || || || |||||| Sbjct 63334 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTT 63393 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | ||||| | ||| ||||| || || ||| |||||| || Sbjct 63394 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGC-ACAGAAGCTTCCAGAGAA 63452 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 ||||||||||| || |||||||| || | ||| | || ||| |||| Sbjct 63453 AAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 63508 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 | ||||| | || ||| | ||||| | |||||| || || |||| Sbjct 63509 --CGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAAC 63566 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | ||||||| ||| || | || |||| || | || | ||| Sbjct 63567 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACT 63626 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || || || || |||||||| || || || || || || ||| | || || Sbjct 63627 GTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTC 63686 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | | ||| || || || | ||||| |||| |||||| ||| || || || Sbjct 63687 CGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGA 63746 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || || || || ||||| |||| | || ||||| ||||| | | || ||| Sbjct 63747 GGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTC 63806 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | ||||| |||||||| ||||| ||| | ||||| ||| || || || Sbjct 63807 CCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGC 63866 Query 37709 ACGTTTATACATCGTCCAAAT 37729 ||| ||||| |||||| Sbjct 63867 TTTTTTGTACATTTCCCAAAT 63887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591135512989920