Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq67887 98.7 8e-16 seq35257 93.3 4e-14 seq73737 86.0 5e-12 >seq67887 Length=198949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| |||| || ||||| |||||| ||| |||| || Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || ||||| || ||| | || |||||| Sbjct 191121 GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 191062 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || || |||||||| |||| | |||||||| ||| Sbjct 191061 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTACAAC 191002 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || ||||| ||| |||| Sbjct 191001 ATTCAAAAGGAGTCCACTCTCCACTTGGT 190973 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| || || |||| ||| Sbjct 190497 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 190438 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || ||||| ||||| | ||| ||||| Sbjct 190437 GATACTATTGACAATGTGAAAGCTAAGATTCAG-GACAAGGAGGGTATTCCCCCGGATCA 190379 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || ||||||||||| || |||||||||||| ||| | || ||||| || Sbjct 190378 GCAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAA 190319 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| || || || || |||||| Sbjct 190318 CATTCAGAAGGAGTCCACCCTGCAC 190294 >seq35257 Length=66376 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| |||||||| |||||||| || ||| || || Sbjct 801 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 742 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || | ||| || || || || ||||| | || ||| || Sbjct 741 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 682 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || || || ||||| ||| || || | || ||||| || Sbjct 681 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 622 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| || || |||||||| || Sbjct 621 TATTCAGAAGGAGTCTACTCTCCA 598 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| ||||| || ||||||||||| ||| || ||| Sbjct 1484 ATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATTACATTGGAAGTTGAGAGCTCA 1425 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| || || || || | || ||| || Sbjct 1424 GACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCAG 1365 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || || || || || ||||| |||||| | ||| |||| ||||||||| Sbjct 1364 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAAC 1305 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || ||| | || | ||||| |||| || || Sbjct 1304 ATCCAGAAGGAATCTACCCTTCACCTTGTTCTCAGATTGAGAGGTGGCAT 1255 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 1029 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 970 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| |||||| ||||| || || | || ||||| Sbjct 969 GGACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATCA 910 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || |||||||||||| | ||| | || || ||||| Sbjct 909 GCAGAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTCGCTGACTATAA 850 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||| || || || || ||| Sbjct 849 CATTCAAAAGGAGTCAACACTCCAC 825 >seq73737 Length=23676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| ||||| || |||||||| || ||| || || Sbjct 13689 AATGCAAATCTTTGTTAAAACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13630 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || | ||| || || || ||||| || | || || || Sbjct 13629 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 13570 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| ||| || || | || || ||||| Sbjct 13569 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATAA 13510 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||| || || || || ||| Sbjct 13509 CATTCAAAAGGAGTCAACACTCCAC 13485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||| || |||||||| || ||||| || ||||||||||||||| | ||| | || || Sbjct 13415 AGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGA 13356 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||| |||||||| |||||||| || ||| Sbjct 13355 TTATAATATTCAAAAGGAATCTACCCTTCAC 13325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||| || |||||||| || ||||| || ||||||||||||||| | ||| | || || Sbjct 14031 AGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGA 13972 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||| |||||||| |||||||| || ||| Sbjct 13971 TTATAATATTCAAAAGGAATCTACCCTTCAC 13941 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || |||||||| || ||| || || Sbjct 13917 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13858 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || | ||| || || || ||||| || | || || || Sbjct 13857 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 13798 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| ||| || || | || || ||||| Sbjct 13797 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATAA 13738 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||| || || || || ||| Sbjct 13737 CATTCAAAAGGAGTCAACACTCCAC 13713 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || || || || Sbjct 14373 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAGGTTGAGAGCTC 14314 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 14313 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCA 14254 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | || ||||| || || ||||| |||||| | |||| |||| |||||||| Sbjct 14253 GCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 14194 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || || ||||| || || ||| Sbjct 14193 CATCCAGAAGGAATCCACCCTTCAC 14169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424577604088692