Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq70622 134 2e-26 seq25445 107 2e-18 seq113574 102 1e-16 seq75959 93.3 5e-14 seq43445 91.5 2e-13 >seq70622 Length=39777 Score = 134 bits (148), Expect = 2e-26 Identities = 251/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || || || ||||| || ||| || | || |||||| Sbjct 2577 CCAGGGACAGGGAAGACATTGCTAGCTAAGGCGATCGCCGGAGAAGCAGAGGTTCCATTC 2636 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| || | ||||| |||||||||||||||||||| || || ||| Sbjct 2637 TTATCTCTCTCTGGTTCAGAGTTTGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 2696 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | || | || | | || |||||| ||| ||| | ||||| |||||||||||| Sbjct 2697 AGGGACTTATTCAACAAGGCAAAGGAAAATTCACCTTGTTTAGTCTTTATTGATGAGATT 2756 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | |||| | | ||||| | | |||||| || ||||| || Sbjct 2757 GATGCTGTTGGGAGGCAAAGAGGAACTGGTATTGGCGGTGGAAATGATGAAAGAGAGCAG 2816 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTG 175611 ||| |||||||||| ||||| || |||||||| ||| || || | ||||| | | Sbjct 2817 ACACTTAATCAACTTCTCACTGAAATGGATGG-TTTCACTGGAA--ACACTGGAGTCATT 2873 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| ||||||||| | || || |||||| | || | ||||| || || | Sbjct 2874 GTCATTGCTGCCACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTCGACCTGGAAGA 2933 Query 175672 TTTGAT 175677 |||||| Sbjct 2934 TTTGAT 2939 >seq25445 Length=22738 Score = 107 bits (118), Expect = 2e-18 Identities = 280/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| | || || ||| | ||| | |||||||| | || | ||||| | | | || || Sbjct 3165 GAGGTCGTAGAATTTTTGAAGAAGCCCGAGAGGT-TTACCGCAGTGGGGGCTCGTATTCC 3223 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || |||||||| || || || || Sbjct 3224 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAGACCCTGCTAGCAAAGGCAAT 3283 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | ||||| ||||||| Sbjct 3284 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTTGTTGAGATGT 3342 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || || ||||| || | | ||| |||||| | Sbjct 3343 TTGTTGGTGTAGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 3402 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 3403 CCTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 3462 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || ||||| || || ||||| || | || |||||| | || || ||||| || Sbjct 3463 GAGG--AGGGAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACAGAAATGGACGG 3520 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 3521 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 3580 >seq113574 Length=79877 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||||| || |||||||||| ||||||||||||||| | || || | || | | Sbjct 17690 GACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAGATT 17631 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | || | | | |||| ||||| ||||| | ||| | || | | || ||||| Sbjct 17630 C-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGATCCA 17572 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | ||| || ||||| |||||| | ||||||| | |||||| ||| | ||||| Sbjct 17571 CAAGGATGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGATGGTTCAC 17512 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | ||||| | || |||||||| || |||||||| || Sbjct 17511 TCATGCATCTCCAACATTATTTAATGCTGGAACTCCAAGACCTCA 17467 >seq75959 Length=145061 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/276 (68%), Gaps = 11/276 (4%) Strand=Plus/Minus Query 64957 TACATTAAGGATGGATCTGA--AAAGAAGCAG-TTATTTGAAGCCATCCAAACTGTACCA 65013 ||||| ||||| ||||| ||| |||||| ||||| || | | ||| | || Sbjct 63608 TACATCAAGGAC---TCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCCCC 63552 Query 65014 TGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCG-CTCCTT 65072 ||| |||||||||||||||| |||||| | ||| | ||| || || | || Sbjct 63551 TGTGTTGAGAAGAAGGCGAAGTGGGCACTACGTTGGATCGAC----GGTTCCGAAACATT 63496 Query 65073 CGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTG 65132 || ||||| | |||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 63495 TGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTG 63436 Query 65133 CGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACT 65192 ||||| | ||||| || |||||||| | ||||| || || |||||| || || | Sbjct 63435 TGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAGTT 63376 Query 65193 TATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||||| | || || ||| | ||| || ||||| Sbjct 63375 GATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGC 63340 >seq43445 Length=222620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/283 (68%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || ||||| || | || |||| | || ||||| || ||| ||||| Sbjct 212580 CCTGGCACTGGTAAGACACTTTTGGCTAGAGCAGTAGCTGGTGAGGCAGGTGTGCCATTT 212521 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || || Sbjct 212520 TTCTCATGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTCGGTGTGGGAGCTTCTAGAGTA 212461 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 212460 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG-CCTTGTATTGTGTTTATTGATGAGAT 212402 Query 175494 TGATGCGGTGGGCAAGCAACG-----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAG 175547 |||||| || || | |||| | ||| ||| || ||| | |||||| ||||| Sbjct 212401 TGATGCTGTTGGAAGGCAAAGAGGGGCAGGGCTTGGAGGT------GGAAATGATGAGAG 212348 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || || ||||||||||| | || || |||||||| ||| Sbjct 212347 GGAGCAGACTATTAATCAACTGTTGACAGAAATGGATGGGTTT 212305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595379831418240