Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq102184 105 6e-18 seq67887 93.3 3e-14 seq110773 89.7 4e-13 seq68600 89.7 4e-13 seq2656 87.8 1e-12 seq73737 86.0 5e-12 seq107061 84.2 2e-11 seq91242 82.4 6e-11 seq72910 82.4 6e-11 >seq102184 Length=23720 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | |||||||| ||||| ||| | ||| || | Sbjct 2142 ATGCAGATCTTTGTCAAGACACTTACCGGCAAGACCATCACCCTTGAAGTTGAAAGTTCA 2083 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | | |||||| |||||| ||||| ||||| | || ||| || Sbjct 2082 GATACTATCGACAATGTAAAAGCAAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAG 2023 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || || || ||||| | || ||| |||| ||||||||| Sbjct 2022 CAGAGACTGATCTTTGCCGGGAAGCAACTTGAGGACGGGAGGACATTGGCAGATTACAAC 1963 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| ||||| || || |||| Sbjct 1962 ATTCAGAAAGAGTCAACCCTGCA 1940 >seq67887 Length=198949 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 |||||||| ||||||||||| |||| || ||||| |||||| | ||| ||| || || Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || ||||||| ||||| ||||| | || ||| Sbjct 191121 GAC---ACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGAT 191065 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | || | ||| || || ||| |||| || | | |||| | || |||||| Sbjct 191064 CAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTAC 191005 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || || | ||| ||||| Sbjct 191004 AACATTCAAAAGGAGTCCACTCTCCACTTGGTG 190972 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || ||||| |||||||| || | || ||| | Sbjct 190497 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 190438 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || ||| |||||| ||||| || || | ||| |||||| Sbjct 190437 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 190378 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | |||||| || || |||| |||| |||| | || ||||||||| Sbjct 190377 CAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAAC 190318 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || ||||| | || || | || || || || Sbjct 190317 ATTCAGAAGGAGTCCACCCTGCACCTTGTCCTACGTCTCCGTGGTGG 190271 >seq110773 Length=86849 Score = 89.7 bits (98), Expect = 4e-13 Identities = 167/244 (68%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 110257 TTATAAGAGATTTAAA-ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCG 110315 |||| | | ||||| | ||||| || || || ||||| | ||||| || ||||| || Sbjct 42821 TTATTATATATTTACAGATGCAGATCTTCGTGAAAACCCTTACCGGAAAGACCATAACTC 42762 Query 110316 TCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAG 110375 |||| ||| | ||| || ||| | | |||||| || || ||||| |||| Sbjct 42761 TCGAGGTCGAGAGTTCCGACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAGGAAG 42702 Query 110376 GCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAA 110435 | | ||| ||||| ||||| ||||| | || || || ||||| ||||| | | | | Sbjct 42701 GAATTCCCCCAGATCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTA 42642 Query 110436 CAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAG 110495 | | || ||||||||||| || || |||||||| | ||| |||| | | || |||| Sbjct 42641 CTCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCACTTGGTCCTCCGTCTCCGAG 42582 Query 110496 GGGG 110499 | || Sbjct 42581 GTGG 42578 >seq68600 Length=37585 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | || || || ||||| || |||| ||| | Sbjct 32582 ATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATAACACTCGAGGTTGAGAGTTCT 32523 Query 110333 GATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | | || |||||| |||||| ||||| ||||| | || | ||||| Sbjct 32522 GACACTATTGACAATGTTAAAACA-AAGATTCAAGACAAGGAAGGAATTCCTCTAGATCA 32464 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | |||| ||| || ||||| || | ||||| ||||| | || ||||| | Sbjct 32463 ACAAAGGTTGATTTTTGCTGGAAAACAACTCGGGGATGGTCGAACACTTGCTGATTATAG 32404 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || | || | |||||| | || || || || Sbjct 32403 CATTCAGAAGGAATCCACACTCCATCTTGTGTTACGTCTTCGCGGAGG 32356 >seq2656 Length=23473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| ||||||||||||||||| || || || ||||| || | ||| |||| || Sbjct 20272 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 20331 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || || || ||| || |||||||| | || ||| Sbjct 20332 GAC---ACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGAT 20388 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| ||||| ||||||||||||| | || | || |||||| Sbjct 20389 CAGCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTAC 20448 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| ||||| || | ||| | ||| Sbjct 20449 AATATCCAAAAGGAATCCACACTCCACCTTGTG 20481 >seq73737 Length=23676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| ||||| ||||| ||||| || |||||||| || | ||| ||| || Sbjct 13689 AATGCAAATCTTTGTTAAAACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13630 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | | || || |||||| || |||||||| | || ||| | Sbjct 13629 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 13571 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || |||||| ||||||||| || ||| | || || || | Sbjct 13570 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATA 13511 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||||||||| || || || Sbjct 13510 ACATTCAAAAGGAGTCAAC 13492 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| ||||| || || ||||| || |||||||| || | ||| ||| || Sbjct 13917 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13858 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | | || || |||||| || |||||||| | || ||| | Sbjct 13857 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 13799 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || |||||| ||||||||| || ||| | || || || | Sbjct 13798 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATA 13739 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||||||||| || || || Sbjct 13738 ACATTCAAAAGGAGTCAAC 13720 >seq107061 Length=185541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 || ||||||||| | || ||||| || ||||| |||| ||| || |||||| |||| Sbjct 85909 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 85850 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | || |||| |||||||||||||| |||||||| || | ||| | || || Sbjct 85849 GATGGGCGGACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTTTG 85790 Query 110486 AGACTGCGAGGGGGAA 110501 || || | || |||| Sbjct 85789 AGGCTCAGGGGAGGAA 85774 >seq91242 Length=50504 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| ||| |||| || || || || || | || |||| Sbjct 24425 ATGCAGATATTTGTCAAGACTCTAACTGGGAAGACTATCACTTTGGAGGTGGAGAGCTCT 24366 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| |||||| ||||| || || | ||| ||||| Sbjct 24365 GATACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCCCCAGATCAG 24306 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| ||||| ||||||||||||| | || | || ||||| ||| Sbjct 24305 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAAC 24246 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || |||||||| || | ||| | ||| Sbjct 24245 ATCCAGAAAGAATCCACCCTTCACCTCGTG 24216 >seq72910 Length=47125 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 || ||||| || || || ||||| |||| || || ||||| ||| | || || | || Sbjct 43300 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAATCC 43241 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||| || ||| | | || || ||||| ||||| |||||| | || ||| Sbjct 43240 TC-CGACACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCGGA 43182 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || || | || |||| || || |||||||||||||||| | |||| | || ||||| Sbjct 43181 CCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTGGAGGATGGCCGAACCCTAGCTGATTA 43122 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || || ||||| || | || ||||| Sbjct 43121 CAACATCCAGAAGGAATCCACTCTCCATTTGGTG 43088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412038833121164