Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq102184 105 5e-18 seq73737 102 6e-17 seq67887 95.1 1e-14 seq2656 89.7 4e-13 seq35257 87.8 1e-12 seq11802 86.0 5e-12 >seq102184 Length=23720 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | ||| || | Sbjct 2142 ATGCAGATCTTTGTCAAGACACTTACCGGCAAGACCATCACCCTTGAAGTTGAAAGTTCA 2083 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | | |||||| ||||||| || || ||||| | || ||| ||| Sbjct 2082 GATACTATCGACAATGTAAAAGCAAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAG 2023 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || || || ||||||| | ||| |||| || |||||| Sbjct 2022 CAGAGACTGATCTTTGCCGGGAAGCAACTTGAGGACGGGAGGACATTGGCAGATTACAAC 1963 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || ||||| || |||| Sbjct 1962 ATTCAGAAAGAGTCAACCCTGCA 1940 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| ||||| || || || || || || | || ||| | Sbjct 1914 ATGCAGATTTTTGTCAAGACTTTGACTGGGAAGACAATAACTTTGGAGGTTGAGAGTTCT 1855 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| || || || || | || || ||| Sbjct 1854 GATACCATTGACAATGTCAAAGCAAAGATTCAAGACAAGGAGGGTATCCCGCCAGACCAG 1795 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| |||||||| |||||||||| || || | |||||||| ||| Sbjct 1794 CAGCGTTTGATCTTTGCTGGTAAACAACTGGAGGACGGCAGGACTCTTGCGGACTATAAC 1735 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || || |||||||| || | || |||| ||| | || |||||| Sbjct 1734 ATCCAGAAGGAGTCGACTCTCCATTTGGTCTTGCGTTT--GAGGGG 1691 >seq73737 Length=23676 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || ||||| || |||||||| || | ||| ||| ||| Sbjct 13301 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13242 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||| ||||||||||| | || ||| | Sbjct 13241 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 13183 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||| ||||||| | | ||| |||||||||||| Sbjct 13182 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACA 13123 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | || || ||||||||||| | || | ||| |||| || | || ||| Sbjct 13122 ATATCCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 13073 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| ||||| || |||||||| || | ||| ||| ||| Sbjct 13689 AATGCAAATCTTTGTTAAAACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13630 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||| ||||||||||| | || ||| | Sbjct 13629 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 13571 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||| ||||||| | | ||| | || ||||| | Sbjct 13570 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATA 13511 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||||||||||||||| || Sbjct 13510 ACATTCAAAAGGAGTCAAC 13492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || ||||| || |||||||| || | ||| ||| ||| Sbjct 13917 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 13858 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||| ||||||||||| | || ||| | Sbjct 13857 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 13799 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||| ||||||| | | ||| | || ||||| | Sbjct 13798 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATA 13739 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||||||||||||||| || Sbjct 13738 ACATTCAAAAGGAGTCAAC 13720 >seq67887 Length=198949 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||||||||| |||| || ||||| |||||| | ||| ||| ||| Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || ||||| | || ||||| Sbjct 191121 -GACACAATTGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 191063 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||| |||| |||| | ||| | || || ||||| Sbjct 191062 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTACAA 191003 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||||||| || | ||| ||||| Sbjct 191002 CATTCAAAAGGAGTCCACTCTCCACTTGGTG 190972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || || |||||||| || | || ||| | Sbjct 190497 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 190438 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || ||| |||||| || || || || | ||| ||||||| Sbjct 190437 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 190378 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | |||||| || || |||| || | ||| | || || |||||| Sbjct 190377 CAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAAC 190318 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| |||||||| || ||||| Sbjct 190317 ATTCAGAAGGAGTCCACCCTGCAC 190294 >seq2656 Length=23473 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||||||||| ||||| || ||||| || | ||| |||| ||| Sbjct 20272 ATGCAGATATTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 20331 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || || ||| ||||||||||| | || ||||| Sbjct 20332 -GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCA 20390 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||||||||| | || | || || ||||| Sbjct 20391 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 20450 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| || || | ||| | ||| Sbjct 20451 TATCCAAAAGGAATCCACACTCCACCTTGTG 20481 >seq35257 Length=66376 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| ||||| || |||||||| || | ||| ||| ||| Sbjct 801 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 742 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || |||||| ||||| || || | || || | Sbjct 741 A-GACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACC 683 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | ||| || || ||| ||||||| | | ||| | || || |||| Sbjct 682 AGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACA 623 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | ||||| ||||||||||| | || | ||| |||| || | || ||| Sbjct 622 ATATTCAGAAGGAGTCTACTCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 573 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || ||||| || ||||| || || | ||| ||| ||| Sbjct 1029 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 970 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || | | | | || || ||| ||| || || |||||| | || ||||| Sbjct 969 G-GACACGATTGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGCATCCCACCGGATC 911 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || || || |||| || | | || | || ||||| | Sbjct 910 AGCAGAGGCTGATATTTGCAGGAAAGCAATTGGAAGATGGGAGGACTCTCGCTGACTATA 851 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||||||||||||||| || Sbjct 850 ACATTCAAAAGGAGTCAAC 832 >seq11802 Length=78489 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || || |||||||| |||||||||||| | || ||| ||| | Sbjct 56525 ATGCAAATCTTTGTGAAGACATTAACAGGGAAAACCATTACCCTTGAGGTTGAGAGCTCG 56466 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || || ||| ||||| ||||| | || || || Sbjct 56465 -GACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCTGACCA 56407 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| ||||||||||| ||||| | | || | || || || || Sbjct 56406 GCAGAGGTTGATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTTTAGCTGATTATAA 56347 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || ||||| || || | || ||||| || Sbjct 56346 CATCCAGAAGGAATCAACCCTCCATTTGGTGCTG 56313 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || | || ||||||||||| ||| |||| ||| | Sbjct 57437 ATGCAAATCTTTGTAAAGACCCTCACTGGCAAAACCATCACCCTCGAGGTTGAGAGTTCA 57378 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || |||||| ||||| ||||| | || |||||| Sbjct 57377 GACACTATCGACAATGTTAAGGCAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 57318 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || | || | ||| || || ||| | ||||| | | ||| | || |||||||| Sbjct 57317 CAAAGGTTGATCTTTGCTGGAAAGCAGTTAGAGGATGGCCGAACTCTTGCTGACTACAAT 57258 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||||||||| Sbjct 57257 ATCCAAAAGGAGTCTAC 57241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398101187552572