Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq73737 105 1e-17 seq68600 105 1e-17 seq11802 105 1e-17 seq35257 95.1 2e-14 seq2656 91.5 2e-13 seq60369 87.8 3e-12 seq102184 86.0 1e-11 >seq73737 Length=23676 Score = 105 bits (116), Expect = 1e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || |||||||| || | || || || | Sbjct 14599 TGCAAATCTTCGTTAAAACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTCGG 14540 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || ||||| ||| ||| ||||| |||||||| || |||| Sbjct 14539 ACACTATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAAC 14480 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | |||||||| || || ||||| || ||| | || | |||||||||||| Sbjct 14479 AAAGGTTGATTTTTGCGGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAATA 14420 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 14419 TTCAAAAGGAGTCAAC 14404 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || || || || || || | || || || | || Sbjct 14143 TGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTCCG 14084 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || ||||| ||| || || || ||||| || || | Sbjct 14083 ATACCATTGATAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAGC 14024 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| ||||||||||| |||||||| || ||| || || | |||||||||||| Sbjct 14023 AGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAATA 13964 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 13963 TTCAAAAGGAATCTAC 13948 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||| || | || || || | Sbjct 14371 TGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAGGTTGAGAGCTCGG 14312 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || |||||| ||| || || || || ||||| ||||| | Sbjct 14311 ACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCAGC 14252 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| || || |||||||| ||| ||||| | | |||||||| | Sbjct 14251 AGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAACA 14192 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 14191 TCCAGAAGGAATCCAC 14176 >seq68600 Length=37585 Score = 105 bits (116), Expect = 1e-17 Identities = 161/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||| |||| ||||| || ||||| | || || ||| || Sbjct 35303 TGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTT-AACTC--CG 35247 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| |||| ||||| ||| || ||||| ||||| || ||||||| Sbjct 35246 ACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAAC 35187 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | |||||||| || |||||| | || ||| | ||| | | ||||| |||| Sbjct 35186 AAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAATACTTGCTGATTACAATA 35127 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || || || || ||| ||||| | || || || | | |||||| Sbjct 35126 TTCAGAAGGACTCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGT 35080 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| || || || | || || || | | Sbjct 32581 TGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATAACACTCGAGGTTGAGAGTTCTG 32522 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| |||| || || ||| || ||||| ||||| | ||||||| Sbjct 32521 ACACTATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCTAGATCAAC 32462 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | |||||||| || |||||| | | ||| | |||| | | ||||||| | Sbjct 32461 AAAGGTTGATTTTTGCTGGAAAACAACTCGGGGATGGTCGAACACTTGCTGATTATAGCA 32402 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || || ||||| || ||||| | || ||||| | | |||||| Sbjct 32401 TTCAGAAGGAATCCACACTCCATCTTGTGTTACGTCTTCGCGGAGGT 32355 >seq11802 Length=78489 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||||||||| ||||| ||||| |||| || || | Sbjct 56524 TGCAAATCTTTGTGAAGACATTAACAGGGAAAACCATTACCCTTGAGGTTGAGAGCTCGG 56465 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || |||||| ||| ||| ||||| || ||||| || || | Sbjct 56464 ACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCTGACCAGC 56405 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| |||||||| | || ||| || || ||| | |||||||| | Sbjct 56404 AGAGGTTGATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTTTAGCTGATTATAACA 56345 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||| || ||||||| || Sbjct 56344 TCCAGAAGGAATCAACCCTCCATTTGGT 56317 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| || |||||||| || ||||| |||| || || | || Sbjct 56980 TGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACACTTGAGGTTGAGAGTTCCG 56921 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| |||||| || ||||||||||||||| || ||||| | Sbjct 56920 ATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAGC 56861 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || || || || || ||| | || ||| | | || | | || || |||| Sbjct 56860 AGAGGTTGATCTTCGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACAATA 56801 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| ||||| Sbjct 56800 TTCAGAAGGAATCCACTCTCCAT 56778 >seq35257 Length=66376 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || ||||| ||| || || || ||||| || || Sbjct 1196 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCAG 1137 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||||| ||||||||||| |||||||| || ||| | || || | ||||||||||| Sbjct 1136 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGAAAGGACTCTCGCAGATTATAAT 1077 Query 146211 ATACAAAAAGAATCGAC 146227 || ||||| ||||| || Sbjct 1076 ATTCAAAAGGAATCCAC 1060 >seq2656 Length=23473 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || ||||||||||| || || | || || || | | Sbjct 20045 TGCAAATCTTCGTCAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAGAGTTCGG 20104 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || || ||||| ||| ||| ||||| ||||| || || || | Sbjct 20105 ACACAATTGATAACGTGAAGGCCAAAATTCAAGATAAGGAAGGGATTCCCCCAGACCAGC 20164 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || |||||||| || ||| | || ||| || || | | |||||||| | Sbjct 20165 AGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATAACA 20224 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||| || || ||||| | ||| | || || || || || ||||||| Sbjct 20225 TACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGGTA 20272 >seq60369 Length=529 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 146052 TTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAA 146111 ||||| || |||||||| || | || || || || || ||| | ||||| || Sbjct 2 TTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTCGGACACGATTGACAATGTTAAG 61 Query 146112 AATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGT 146171 ||||||||| ||||| || || ||||| ||||| || || || || |||||||| Sbjct 62 GCGAAAATACAAGACAAAGAGGGTATCCCACCGGATCAGCAGAGGCTGATATTTGCAGGG 121 Query 146172 AAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATC 146231 || ||||| || ||| | || | ||||||||||||| ||||| || || ||| || Sbjct 122 AAGCAATTGGAAGATGGGCGTACTCTCGCAGATTATAATATTCAAAAGGAGTCAACTCTC 181 Query 146232 CATTTAGT 146239 || |||| Sbjct 182 CACCTAGT 189 >seq102184 Length=23720 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | || ||||| || || || ||||| || | || || || | | | Sbjct 1685 TGCAGATCTTTGTGAAGACATTGACTGGGAAGACAATCACCTTGGAAGTGGAGAGCTCA- 1627 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || ||||| ||| |||||||||||||| ||||| Sbjct 1626 GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATTCCACCAGATCAG 1567 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || ||||| ||||| || | || ||| | | ||| | |||| || ||| Sbjct 1566 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACGCTTGCAGACTACAAT 1507 Query 146211 ATACAAAAAGAATCGACTATCCAT 146234 || || ||||| || ||| | ||| Sbjct 1506 ATCCAGAAAGAGTCTACTCTTCAT 1483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784598509040160