Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq159548 93.3 2e-14 seq107720 93.3 2e-14 seq104053 93.3 2e-14 seq154472 91.5 5e-14 seq140660 89.7 2e-13 >seq159548 Length=155745 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38286 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38345 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 38346 CTGCTCTACCCCGC 38359 >seq107720 Length=4133 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 1748 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 1807 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 1808 CTGCTCTACCCCGC 1821 >seq104053 Length=22247 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 14713 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 14772 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 14773 CTGCTCTACCCCGC 14786 >seq154472 Length=26475 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||| | | |||| ||| ||||||||| |||||||||| || Sbjct 1334 GTTGCGGAGACAGGATTTGAACCTGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 1275 Query 50170 CTGCTCTACTCCG 50182 ||||||||||||| Sbjct 1274 CTGCTCTACTCCG 1262 >seq140660 Length=155576 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| |||||| || |||||||||| || Sbjct 48280 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGTCTTGCGAGCTACCAAA 48339 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 48340 CTGCTCTACCCCGC 48353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181259128675176