Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq73737 89.7 5e-13 seq107061 87.8 2e-12 seq110773 84.2 2e-11 >seq73737 Length=23676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| ||||| || | |||||| ||| ||||||||||| || | | Sbjct 14635 GACTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTGCA 14694 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||||||||| || || |||||||| || ||||| ||| | Sbjct 14695 AAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTAACA 14754 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| ||||||| || | || || |||||||| || || Sbjct 14755 TTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGTCTTC 14814 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 14815 ACAAAGATCTGCAT 14828 >seq107061 Length=185541 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||||||||| || || ||| ||| |||||| | |||||| || | Sbjct 85807 TTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAG 85866 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC--GGTAA 132035 | | || || | ||| ||||| |||||||||||||||||||| ||||| Sbjct 85867 CAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATCCTGGTAA 85916 >seq110773 Length=86849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || ||||||||||| ||| | |||||| ||| ||| Sbjct 42140 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCGAGGGTACGGCCATCCTCG 42199 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| | | ||| || |||||||| ||||| || ||||| | Sbjct 42200 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGA 42259 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||||| | ||| || || | || | ||||| Sbjct 42260 ATTTTGGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCAAGGGTGATTGTTTTG 42319 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||| |||||||| Sbjct 42320 CCGGTGAGGGTTTTGACGAAGATCTGCAT 42348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || ||||||||||| ||| | |||||| ||| ||| Sbjct 42368 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCGAGGGTACGGCCATCCTCG 42427 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| | | ||| || |||||||| ||||| || ||||| | Sbjct 42428 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGA 42487 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||||| | ||| || || | || | ||||| Sbjct 42488 ATTTTGGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCAAGGGTGATTGTTTTG 42547 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||| |||||||| Sbjct 42548 CCGGTGAGGGTTTTGACGAAGATCTGCAT 42576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475660670453280