Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2656 100 3e-16 seq68600 93.3 4e-14 seq35257 93.3 4e-14 seq73737 89.7 5e-13 seq67887 89.7 5e-13 seq11802 89.7 5e-13 seq102184 82.4 7e-11 >seq2656 Length=23473 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| ||||| ||||| || || ||||||| | ||||| || ||| Sbjct 19815 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGAGAGCTC 19874 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| ||||| | ||||| ||| || || || |||||||| || || || | Sbjct 19875 A-GATACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 19933 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || | || | | || |||||||| || |||| || | | ||||||| Sbjct 19934 AGCAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGATTACA 19993 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || ||||| ||| ||||||| ||| | | |||| ||||| Sbjct 19994 ATATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 20042 >seq68600 Length=37585 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 25163 CAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAA 25222 |||||| ||| |||||| | ||||| || ||| |||| ||||| | || || |||| Sbjct 35315 CAATTATACAG-ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAG 35257 Query 25223 GTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATA 25282 || | || || ||||| || | || ||| ||||||| || || || || || Sbjct 35256 GTTAACTCCGAC---ACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATT 35200 Query 25283 CCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTC 25342 || || ||||| ||||| | |||| | || |||||||| ||||||| | ||| | Sbjct 35199 CCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAATACTT 35140 Query 25343 AGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| || || ||||| | ||| | ||||| Sbjct 35139 GCTGATTACAATATTCAGAAGGACTCCACTCTCCATCTTGTGTT 35096 >seq35257 Length=66376 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || || || |||||||| | || || || Sbjct 1257 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTC 1198 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || || || ||||| |||||||| || || || || Sbjct 1197 TGATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCA 1138 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| |||| | || |||||| | |||||||| || | | || ||||| || Sbjct 1137 GCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGAAAGGACTCTCGCAGATTATAA 1078 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 ||||||||| ||||||||| |||| Sbjct 1077 TATTCAAAAGGAATCCACCCTTCA 1054 Score = 89.7 bits (98), Expect = 5e-13 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 25158 GTTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGA 25217 ||||| ||||| | ||||| | ||||| ||||| ||||| |||||| | || || Sbjct 1499 GTTTT--ATTAATACAGATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATTACAT 1442 Query 25218 TCGAAGTCGA-AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAG 25276 | ||||| || ||| | || || || || | || || ||||| ||||| || Sbjct 1441 TGGAAGTTGAGAGCTCA-GACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAA 1383 Query 25277 GGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 25336 ||||| ||||| || ||||| || || |||| || || || ||| | ||||||| ||| Sbjct 1382 GGTATCCCGCCAGACCAGCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGA 1323 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | | ||||| || || || || ||||| ||| |||| | || | ||||||||| Sbjct 1322 ACGCTGGCTGATTATAACATCCAGAAGGAATCTACCCTTCACCTTGTTCTCAGATTGAGA 1263 Query 25397 GGAGG 25401 || || Sbjct 1262 GGTGG 1258 >seq73737 Length=23676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || || || |||||||| | || || || Sbjct 14145 CATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTC 14086 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || || | || || || || ||||| |||||||| || || || || Sbjct 14085 CGATACCATTGATAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGACCA 14026 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| |||| | || |||||| | ||||||| || | | || ||||| || Sbjct 14025 GCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAA 13966 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 ||||||||| ||||| ||| |||| Sbjct 13965 TATTCAAAAGGAATCTACCCTTCA 13942 >seq67887 Length=198949 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| ||||||| ||| | ||||| | ||||| ||| | | Sbjct 190953 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCC 190894 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||| ||||||||||| || || || || ||| Sbjct 190893 GACACTATTGATAACGTTAAGGCGAAAATCCAGGATAAAGAGGGAATCCCACCAGACCAG 190834 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | | ||| || ||||| ||||| | ||| || |||||||| Sbjct 190833 CAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGCCGAACCCTCGCTGATTACAAC 190774 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || || || ||| |||| || || Sbjct 190773 ATCCAGAAGGAGTCTACCCTTCACTTGGT 190745 >seq11802 Length=78489 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || || ||| | || || | |||||||| | Sbjct 56753 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTCGAGAGCTCG 56694 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | ||||| ||| ||| ||||| || || || || || || ||| Sbjct 56693 GACACCATCGACAATGTAAAGGCAAAGATTCAAGATAAGGAAGGGATTCCACCTGACCAG 56634 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || || |||| | || || || || ||||||| || | | ||| |||||||| Sbjct 56633 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACACT-AGCTGATTACAA 56575 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || ||||||||| | ||| | ||| | || |||| || || Sbjct 56574 TATCCAGAAGGAATCCACCCTCCATCTGGTGCTGAGGCTGAGGGGTGG 56527 >seq102184 Length=23720 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||| | ||||| || | ||||| | ||||| ||| Sbjct 2142 ATGCAGATCTTTGTCAAGACACTTACCGGCAAGACCATCACCCTTGAAGTTGAAAGTTCA 2083 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | |||||| ||| ||| || || || ||||| || || || ||| Sbjct 2082 GATACTATCGACAATGTAAAAGCAAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAG 2023 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || ||||| || | | ||| || ||||| || || | || | || || ||||||| Sbjct 2022 CAGAGACTGATCTTTGCCGGGAAGCAACTTGAGGACGGGAGGACATTGGCA--GATTACA 1965 Query 25353 ATATTCAAAAAGAATCCACCATTCAT 25378 | ||||| ||||| || ||| | ||| Sbjct 1964 ACATTCAGAAAGAGTCAACCCTGCAT 1939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444206725983360