Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq68600 96.9 3e-15 seq68234 91.5 1e-13 >seq68600 Length=37585 Score = 96.9 bits (106), Expect = 3e-15 Identities = 179/257 (70%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 106236 TTTGTCATT-TATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGAC 106294 ||| ||||| ||| | | || | |||||||| |||||||| ||| | ||||| ||||| Sbjct 35329 TTTCTCATTGTATGCAATTATACAGATGCAAATCTTTGTTAAGACACTAACTGGAAAGAC 35270 Query 106295 CATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGA 106354 |||||| | || ||| | ||| || ||| | | || ||| ||||||| || Sbjct 35269 CATTACACTCGAGGTT-AACTC--CGACACTATTGACAATGTTAAAACAAAAATTCAAGA 35213 Query 106355 CAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGA 106414 ||| ||||| | || |||||||||||| | |||| ||| || |||||| | ||||| Sbjct 35212 CAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGA 35153 Query 106415 T--TCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 | || || || | | |||||||| || || || || || || || ||| | || ||| Sbjct 35152 TGGTCGAATAC--TTGCTGATTACAATATTCAGAAGGACTCCACTCTCCATCTTGTGTTG 35095 Query 106473 AGGTTACGAGGAGGATA 106489 | | || ||||| || Sbjct 35094 CGTCTTCGCGGAGGTTA 35078 >seq68234 Length=173017 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || ||| || || ||||| |||| ||| || ||||| || ||| Sbjct 57487 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 57428 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| ||| |||||||| || || |||||||| ||||| || | || ||| Sbjct 57427 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTG 57368 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||||||| Sbjct 57367 AGGCTCAGAGGAGGA 57353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401547273613184