Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq75959 161 1e-33 >seq75959 Length=145061 Score = 161 bits (178), Expect = 1e-33 Identities = 352/522 (67%), Gaps = 10/522 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| |||||| | || |||| || Sbjct 63910 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 63852 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || ||||| ||||| | | || || ||||||| | || | | | Sbjct 63851 TGGACTGCTGAGGAAGTCGATTTATCTTCAGATACCCGTCACTGGGAAACCCTAACCCCC 63792 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | ||| | |||||||||| || ||||| |||||||| ||||||| || |||||||| Sbjct 63791 GGCGAAAGGCATTTCATCACTCATGTCCTTGCCTTTTT-CGCCGCCTCAGACGGCATCGT 63733 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 || ||||| ||||| | || |||||||| |||||| | | ||||| ||| || Sbjct 63732 TTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCGGAGGCGCGTGCTTT 63673 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||| ||||| ||||| || ||||||||||| || || | ||| || || | || Sbjct 63672 CTACGGCTTCCAAATCGCGATTGAAAACATCCATTCCGAGATGTACAGTCTGCTTCTAGA 63613 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 | ||| |||||||| | | ||| || | | || ||||| | || || | || Sbjct 63612 GTCTTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCCC 63553 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| ||||| | ||||| | |||||| || || ||| || Sbjct 63552 CTGTGTTGAGAAGAAGGCGAAGTGGGCACTACGTTGGATC------GACGGTTCCGAAAC 63499 Query 1456173 -TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||||| ||||| | || | ||||| | || || || || |||||||| || || || Sbjct 63498 ATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTT 63439 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| || || || ||| | || ||||| || | ||||| || Sbjct 63438 CTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 63397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7162422502150776