Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq75959 168 9e-37 seq75405 113 6e-20 seq113574 105 9e-18 >seq75959 Length=145061 Score = 168 bits (186), Expect = 9e-37 Identities = 572/877 (65%), Gaps = 18/877 (2%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || || ||||| | ||||| || |||||||| || |||| || || Sbjct 63045 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 63104 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||||||||| ||||| || || | | | || || | | Sbjct 63105 CTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAA 63164 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||||||||| || || ||||| |||||| | |||||| || | ||||||||| | || Sbjct 63165 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 63224 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | || || || || | |||||| |||| || || || || |||| | || Sbjct 63225 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 63284 Query 39565 CGATGTTACTACCTCATCACTCGG-TGGATGC--AATAAATGTTTAAACATTAAGCAGGC 39621 | ||| || ||| | | | | | || ||| | || || | || || Sbjct 63285 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCA---AACAAGC 63341 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 || ||||| || | || || || || ||| || ||||| || || || | |||||| Sbjct 63342 AAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGG 63401 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGC 39740 ||||| || |||||||| | ||| ||||| ||| || ||| | ||||| || || || | Sbjct 63402 CATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAGAAGCTTCCAGAGAAAAAAATAC 63460 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT-GT--ATCC 39797 |||| || ||||||||||| | | ||| || || | || || | || |||| Sbjct 63461 CTTCCACACAAGCAAATGCAACCAAACGCTC--CGCAAAT-GTTTCGGAACCGTCGATCC 63517 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | ||||||| | || ||||||| ||||| || || || || | || || | Sbjct 63518 AACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 63577 Query 39858 GATAATG--TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 || || |||||| ||| || || | || | |||| | |||||| ||||| || Sbjct 63578 -ATC-TGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTC 63635 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 |||||||||||||||||||| || || || ||||| ||| | || || | || ||| Sbjct 63636 GGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTG 63695 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 || ||| || ||| | || | ||||| || || || || ||||| || Sbjct 63696 GACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAA 63755 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095 ||| || | ||||| | || |||| |||| |||| || | | | ||||| | Sbjct 63756 AAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACG 63815 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | ||||| |||| ||| ||||| ||||| ||||| || || || || |||||||| Sbjct 63816 GGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTA 63875 Query 40156 CATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 ||| | ||| || | | ||||| ||||| || ||| Sbjct 63876 CATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 63912 >seq75405 Length=32469 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | ||||| || ||||| ||| Sbjct 7020 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACGCGTAGCATTGGTATAATTCCA 7079 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| |||||| ||||||||| || | | |||||||| | |||| Sbjct 7080 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 7139 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 7140 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 7199 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | ||| || |||||| Sbjct 7200 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 7241 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| ||| ||| | || || Sbjct 7337 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 7396 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| || || ||||| | | || | |||||| Sbjct 7397 ATAAGTCTTGATGGCAGATTCGATATCATCCTTGTGGATTCCAACAGAAACTCTCATCAA 7456 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || |||| |||||| || ||| || || || ||||| || |||| Sbjct 7457 CATATGTTGTGGTCTTTCTACAACATTTCCATTAATCTTAAAGAGGTAAGACCGCTCCAA 7516 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 7517 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 7564 Score = 86.0 bits (94), Expect = 9e-12 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| ||||||| | |||||| | | || || || || |||||| ||| ||||||| Sbjct 6509 CTCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCAACAATCTGCCAATCC 6568 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 |||| ||| ||||||| | || ||||| | ||| | ||| |||| || |||| Sbjct 6569 AGGAGCCTCACTTGGACAAAATAAAGACCATTGACCAT--TGCTTTGGACTCTTTCCATA 6626 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 || ||||| || | ||||||||| ||| || ||||||| || | || |||||| Sbjct 6627 AAAAGATCAGGCACCCAAAGAGC-ATAGAAAAGATCTCGGGCCCGATGTTCTTC 6679 >seq113574 Length=79877 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||||||||| |||||||| |||||||||||| || ||| | || || Sbjct 17478 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17537 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| | || | ||||| ||||| || || || || | | || | ||||| Sbjct 17538 ATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGATACTCTCATCAG 17597 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| |||| | || || || ||||| || | || || Sbjct 17598 CATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAAG 17657 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| || || || || Sbjct 17658 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 17705 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | ||||| ||||||| ||| | || | |||||| |||| ||| ||| Sbjct 17057 CCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCCA 17116 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||| ||||| || | || || || || | ||| Sbjct 17117 TTTGATGTCCCATTTGTTCCACGAATGTAACTCCCAATAGCACGTATGTTGTGCACAGAA 17176 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| || | || ||||||||| Sbjct 17177 ACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATATA 17236 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || || || ||| ||||| | || || |||||| Sbjct 17237 CCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 17278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685538863434720