Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq75959 129 5e-25 >seq75959 Length=145061 Score = 129 bits (142), Expect = 5e-25 Identities = 564/878 (64%), Gaps = 27/878 (3%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | || ||| |||||||||||||||| || || || | Sbjct 63910 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCT 63851 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA--CATTGGATTGCATTAAAACC 43824 |||| || || ||||| ||||| || ||| || | || ||| | ||| || Sbjct 63850 GGACTGCTGAGGAAGTCGATTTATCTTCAGA--TACCCGTCACTGGGAAACCCTAACCCC 63793 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 |||| ||||| || || || | || ||||| || || ||||| || || Sbjct 63792 CGGCGAAAGGCATTTCATCACTCATGTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGT 63733 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 ||||| | | | |||| | ||||||| ||| | | || || || ||| Sbjct 63732 TTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCGGAGGCGCGTGCTTT 63673 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || || || ||||| || || ||||| || ||||| || ||||||||||| || |||| Sbjct 63672 CTACGGCTTCCAAATCGCGATTGAAAACATCCATTCCGAGATGTACAGTCTGCTTCTAGA 63613 Query 44005 TACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGAAACAGTA 44062 | |||||||| || |||| || ||| |||| || || | || || | Sbjct 63612 GTCTTACATCAAGGACTCTGACGAAAAAAGCA--GATTATTCCGCGCAGTTGAGACTATC 63555 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTC 44118 || || | | | | | || || | ||||| || ||||| | ||| || | Sbjct 63554 CCCTGTGTTGAGA-AGAAGGCGAAGTGGGCACTACGTTGGATCGACGGTTCC---GAAAC 63499 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 |||| || || | || || ||||| ||||||||| ||||| || || ||| || Sbjct 63498 ATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTT 63439 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 || ||||| |||||||| || || || || |||||||| || || || || || || Sbjct 63438 CTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGA 63379 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCT 44298 ||| || | || ||||| || || || ||||||||||| ||| | | | | | Sbjct 63378 GTTGATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTTTATAGTTTGTT 63319 Query 44299 AGGAGACGATAAGCCTTCATGTAAGAC-AATTACAGATATTGTTGTAGAGGCAGTAAAGA 44357 | | |||| ||| ||| || || | ||| | ||||||| ||| || || ||| Sbjct 63318 AAG-GACG--AAG-CTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGATGCTGTGGAGA 63263 Query 44358 TAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTT 44417 ||||| || ||| || || | ||| | | |||||||||| | || Sbjct 63262 TAGAAAGGGAGTTTGTGTGTGACGCGCTGCCTTGTGCGCTGGTGGGAATGAATGGAGATT 63203 Query 44418 TGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA---ACTGGGTTGCG 44474 |||||| | |||| ||||||| | | || ||| | | | ||||| |||||| | Sbjct 63202 TGATGAGCAAATACATTGAATTCGTGGCTGATAG---ATTGTTGGATGCTTTGGGTTATG 63146 Query 44475 ATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCA 44534 |||| || | || || || |||||||||| ||||| ||| || |||| | Sbjct 63145 ATAAGTTGTACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTTACAAGGGA 63086 Query 44535 AAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | || || || ||||| || | ||||| || |||||| Sbjct 63085 AGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAG 63048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396683150285740